Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq2233 122 7e-23 seq16305 113 4e-20 seq19444 109 5e-19 seq17446 109 5e-19 seq13033 107 2e-18 seq7161 104 2e-17 seq6752 95.1 1e-14 seq27641 91.5 1e-13 seq20385 91.5 1e-13 seq24834 89.7 4e-13 seq9996 87.8 2e-12 seq17755 84.2 2e-11 seq5596 84.2 2e-11 seq22126 82.4 6e-11 >seq2233 Length=2295209 Score = 122 bits (134), Expect = 7e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||| | ||| | || |||| |||| || ||||| || || ||||| ||||| | Sbjct 1388463 CCCCCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 1388404 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || |||||||| ||||| ||| | || || ||||||||||| ||| Sbjct 1388403 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 1388344 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||| || |||||| ||||| | ||| || |||| |||||| Sbjct 1388343 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTCCACC 1388284 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 |||| ||| | |||||||||||| | || || || || || |||||||||| Sbjct 1388283 TCCAGGGTTACGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGA 1388232 >seq16305 Length=36878 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || ||||| || || ||||| || || | || || || |||| |||||||| ||||| Sbjct 3072 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCGTCTTCCAGCTGCTTGCCT 3131 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || ||||||||||| | ||| | |||||| || || |||||| ||| Sbjct 3132 GCAAAGATGAGCCTCTGCTGGTCGAGGGGGATGCCTTCTTTATCTTGGATCTTGGCCTTC 3191 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || |||| ||||||| |||| ||| |||||||||||||| | || Sbjct 3192 ACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 3251 Query 21159 TTGACAAATATTTGCAT 21175 || || || || ||||| Sbjct 3252 TTCACGAAGATCTGCAT 3268 >seq19444 Length=8941331 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 20983 ACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCAT 21042 |||| ||||| ||||| ||||| | || || ||| || ||||| |||||||| ||| Sbjct 7263347 ACTCTTTTTGGATGTTTTAGTCAGAAAGAGTGTGGCTCTCTTCCAGTTGTTTGCCTGCAA 7263406 Query 21043 AAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCT 21102 | || || ||||||||||| ||| | |||||| || || |||||| |||||| | Sbjct 7263407 AGATGAGCCTCTGCTGGTCAGTGGGGATGCCTTCTTTATCCTGGATCTTGGCTTTCACAT 7263466 Query 21103 GGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGA 21162 | || |||| ||||||| |||| ||| ||||||||||| || || || || | Sbjct 7263467 TTTCCGTGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCA 7263526 Query 21163 CAAATATTTGCATTTTGA 21180 || |||| |||||||| Sbjct 7263527 TGAAGATTTTCATTTTGA 7263544 >seq17446 Length=896517 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || ||||| || || ||||| || || | || || || | || Sbjct 702398 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 702339 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| ||| | ||||||||| || Sbjct 702338 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCCTTATCC 702279 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || |||| ||||||| ||||| ||| |||||| Sbjct 702278 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTC 702219 Query 21144 TTGCCGGT 21151 |||||||| Sbjct 702218 TTGCCGGT 702211 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| ||| | || || ||||||||||| ||| | ||||||||| || Sbjct 702107 TCTAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCC 702048 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || |||| |||||| |||| ||| |||||| Sbjct 702047 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTCCACCTCCAGGGTGATGGTC 701988 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||||| || | || || || || || |||||||||| Sbjct 701987 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTTGA 701951 >seq13033 Length=3880709 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | ||||||| |||| |||||||| || || ||||| ||||| | Sbjct 3665183 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 3665242 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||||||||||||| ||| | || || | ||||||||| || Sbjct 3665243 AGCGTGCGGCCATCCTCCAGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGGG 3665302 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| || || ||| || | | | || |||| |||||| Sbjct 3665303 ATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 3665362 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || || ||||| || ||||| Sbjct 3665363 TCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 3665409 >seq7161 Length=8644359 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||| | | ||||||| |||| |||||||| || || ||||| ||||| | Sbjct 6018498 CCACCTCGCTGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 6018557 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || ||| | |||||||||||||||| ||| | || || | ||||||||| || Sbjct 6018558 AGCGTGTGGCCATCCTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGG 6018617 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| || || ||| || | | | || |||| |||||| Sbjct 6018618 ATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 6018677 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || || ||||| || ||||| Sbjct 6018678 TCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 6018724 >seq6752 Length=2939 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || | ||| || | |||| |||||||||||| || ||||| ||||| | Sbjct 2665 CCACCTCTGAGACGGAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAT 2724 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | | || |||||||| || || ||| | || | ||||||||||| || Sbjct 2725 AAGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 2784 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||||||| || || | | | || |||| |||||| Sbjct 2785 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACC 2844 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || |||||||| ||||| | || || || || || ||||| Sbjct 2845 TCAAGAGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 2891 >seq27641 Length=16599674 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || ||||| | ||| | ||| ||||||||||||||||| ||||| | | Sbjct 1039260 CCACCACGAAGTCTCAGCACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 1039201 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || || |||| ||||| || ||||| ||| | || ||||| ||||| || || Sbjct 1039200 AAAGTATGTCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 1039141 Query 21069 ACGCCTTCCTTGTCGGCGATCTT 21091 | ||||||||| || |||||| Sbjct 1039140 ATGCCTTCCTTATCCTGGATCTT 1039118 >seq20385 Length=15889662 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/211 (70%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| || ||||| || || |||| ||||| | || || | | || | |||||| Sbjct 15770371 TGCAGGGTCGACTCTTTCTGGGTGTTGTAGTCAGAAAGAGTGCAGCCATCTTTCAGCTGC 15770430 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 ||||| ||| | || || ||||||||||| ||| | ||||||||| || |||||| Sbjct 15770431 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGTGGGGATGCCTTCCTTATCCTGGATCTTG 15770490 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGG---TAATGGTCTTGCCG 21149 ||||| | || || |||| |||||| |||| || | |||||||||||| Sbjct 15770491 GCCTTCACATTTTAGATGGTGTCACTAGGCTCCACCTCCAGGGTGATGATGGTCTTGCCG 15770550 Query 21150 GTTAACGTTTTGACAAATATTTGCATTTTGA 21180 | | || || ||||| || |||||||||| Sbjct 15770551 ATCAGGGTCTTCACAAAGATCTGCATTTTGA 15770581 >seq24834 Length=2526834 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||| | ||| | ||||||||||||||||||||| ||||| | ||| || | | || || Sbjct 598475 CACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTC 598534 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 ||| || ||||| ||| | || ||||| ||||| || || | |||||||| || Sbjct 598535 CAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTG 598594 Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145 |||||| || || | | ||||| ||| || || | ||| |||||||| Sbjct 598595 GATCTTGGCCTTTACATTTTCTGTCGTATCCGAGGGTTCAACCTCAAGGGTGATGGTCTT 598654 Query 21146 GCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || || | ||||| || || || ||||||||| Sbjct 598655 CCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 598688 >seq9996 Length=19681183 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/227 (69%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||||| |||| |||||||| || || ||||| ||||| | Sbjct 16335091 CCACCTCACAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTG-- 16335148 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || | || | |||||||||||||||| ||| | || || ||||||||| || Sbjct 16335149 AGACTGCGGCCATCCTCCAGCTGTTTGCTAGCAAATATCAGATGCTGCTGGTCAGGTGGG 16335208 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| || || ||| || | | | || |||| |||||| Sbjct 16335209 ATACCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCAACC 16335268 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || || ||||| | ||||| Sbjct 16335269 TCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAACACCTGCAT 16335315 >seq17755 Length=25620257 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | ||||||| |||| |||||||| || || ||||| ||||| | Sbjct 14325064 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 14325005 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||||||||||||| ||| | | || | ||||||||| || Sbjct 14325004 AGCGTGCGGCCATCCTCCAGCTGTTTGCCAGCAAATACCAGACGCTGCTGGTCAGGTGGG 14324945 Query 21069 ACGCCTTCCTTGTC 21082 | || |||||||| Sbjct 14324944 ATACCCTCCTTGTC 14324931 >seq5596 Length=5364348 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||||| || | || |||| |||| ||||||||| || || ||||| ||||| | Sbjct 2613002 CCCCCTCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAT 2613061 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || ||||||||||| || ||| | || | ||||||||||| || Sbjct 2613062 AGGGTACGCCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 2613121 Query 21069 ACGCCTTCCTTGTC 21082 | |||||||||||| Sbjct 2613122 ATGCCTTCCTTGTC 2613135 >seq22126 Length=6662745 Score = 82.4 bits (90), Expect = 6e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||||| || || ||||| ||||| | || ||| | | || Sbjct 461642 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAAGGTGCGCCCATCT 461583 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||||||||| || ||| | || |||||||||||| || | |||||| ||||| Sbjct 461582 TCCAGCTGTTTCCCAGCAAAGATCGATCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCC 461523 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| || || | | | || |||| |||||| || ||| |||||| Sbjct 461522 TGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCACGGGTGATGGTC 461463 Query 21144 TTGCCGGT 21151 ||||| || Sbjct 461462 TTGCCAGT 461455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422110359174152