Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq20084 102 7e-17 seq19202 100 2e-16 seq24834 95.1 1e-14 seq23666 95.1 1e-14 seq9653 95.1 1e-14 seq26070 91.5 1e-13 seq20843 91.5 1e-13 seq20821 91.5 1e-13 seq18140 91.5 1e-13 seq16297 89.7 4e-13 seq27641 86.0 5e-12 seq20631 86.0 5e-12 seq15807 86.0 5e-12 >seq20084 Length=6261642 Score = 102 bits (112), Expect = 7e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||||| ||||| | | ||| || || || ||| ||| | |||||| Sbjct 3809973 AAAATGCAGATTTTCATGAAAACCCTTATGGGGAAGACTATCACCCTCGAGATTGAACCC 3809914 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 |||| | | | || | ||| || || ||||| ||||| | || ||| Sbjct 3809913 TCAGATATGACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 3809854 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| ||| |||| ||||| ||| |||||||| ||| || | || ||| Sbjct 3809853 CAGCAAAGACTGATCATTGCTGGCAAGCAACTGGAAGATGGTTGTACTTTGTCTGACTAC 3809794 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGA 25250 || ||||||||||| ||||||||||| | |||||| || Sbjct 3809793 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTAAGA 3809755 >seq19202 Length=12282305 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||||| ||||| | ||||| || ||||| ||| | | |||||| Sbjct 12257267 AAAATGCAGATTTTCATGAAAACCCTTACGGGGAAGACCATCACCCTCAATGTTGAACCC 12257208 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || ||| | | || | ||| || || ||||| ||||| | || ||| Sbjct 12257207 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 12257148 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || ||||| || |||||||| ||||| ||| |||||||| ||| || | || ||| Sbjct 12257147 CAGCAAAGCCTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTAC 12257088 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || ||||| ||||| ||||||||||| | ||||| Sbjct 12257087 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 12257053 >seq24834 Length=2526834 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | ||||| | ||||| || ||||| ||| || |||||| Sbjct 598687 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTTGAGGTTGAACCC 598628 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || ||| | || | ||| || || ||||| ||||| | || ||| Sbjct 598627 TCGGATACGACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 598568 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||||||| ||||| ||| |||||||| ||| || | || ||| Sbjct 598567 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTCTGTCTGACTAC 598508 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || ||||||||||| || |||||||| | ||||| Sbjct 598507 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTT 598473 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 |||||||||||||| |||||||| ||||| ||| |||||||| ||| || | || Sbjct 2358964 GATCAACAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTCTGTCTGAC 2359023 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 ||||| ||||||||||| || |||||||| | ||||| Sbjct 2359024 TACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTT 2359061 >seq23666 Length=5806929 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | ||||| | || || || ||||| ||| | || |||||| Sbjct 828903 AAAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTCAAAGTTGAACCC 828844 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || | | | | || | ||| || || ||||| ||||| | || ||| Sbjct 828843 TCGGATATGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 828784 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||||||| ||||| ||| |||||||| ||| || | || ||| Sbjct 828783 CACCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTCTGTCTGACTAC 828724 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || ||||| ||||| ||||||||||| | ||||| Sbjct 828723 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 828689 >seq9653 Length=10725 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||||| ||||| | || || || ||||| ||| | | | |||||| Sbjct 1907 AAAATGCAGATTTTCATGAAAACCCTCACAGGGAAGACCATCACCCTCAAGGCTGAACCC 1966 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCC-CGTAGA 25150 | || | | | || | ||| || || ||||| ||||| | || | || | Sbjct 1967 TCGGATATGACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTA-A 2025 Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTA 25210 ||| |||||||| |||||||| ||||| ||| |||||||| ||| || | || || Sbjct 2026 TCAGCAAAGACTAATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 2085 Query 25211 CAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 ||| ||||| ||||| ||||||||||| | ||||| Sbjct 2086 CAACATTCAGAAGGATTCTACTCTTCATCTTGTGTT 2121 >seq26070 Length=4351986 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | ||||| | || || || ||||| ||| ||| |||||| Sbjct 512596 AAAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCC 512655 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 || ||| | | || | ||| || || ||||| ||||| | || ||| Sbjct 512656 TTGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 512715 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||||||| ||||| ||| ||||||| ||| || | || ||| Sbjct 512716 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGACGGACGTACTCTGTCTGACTAC 512775 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || ||||| ||||| ||||||||||| | ||||| Sbjct 512776 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 512810 >seq20843 Length=21849567 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||| |||||||| |||||||| ||||| ||| |||||| | | ||| || | || Sbjct 16593774 GATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGGTGGACATACTTTGTCTGAC 16593833 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 ||||||||||||||||| ||||||||||| | ||||| Sbjct 16593834 TACAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 16593871 Score = 84.2 bits (92), Expect = 2e-11 Identities = 80/101 (79%), Gaps = 6/101 (6%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAA---ACTATGGCC 25205 ||||| |||||||| |||||||| ||||| ||| ||||||| || | ||| || | Sbjct 15156886 GATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA---CAGACGTACTTTGTCT 15156830 Query 25206 GATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || ||||||| ||||||||| ||||||||||| | ||||| Sbjct 15156829 GACTACAATAGTCAAAAGGAGTCTACTCTTCATCTTGTGTT 15156789 >seq20821 Length=1718789 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||||| ||||| | | ||| | ||||| ||| || |||||| Sbjct 1303202 AAAATGCAGATTTTCATGAAAACCCTTAGGGGGACGACCATCACCCTTGAGGTCGAACCC 1303143 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 |||| | | | | || | ||| | || ||||| ||||| | || ||| Sbjct 1303142 TCAGATAAGATAGAAAATGTAAAGGCCACGATCCAGGATAAGGAAGGAATTCCTCCTGAT 1303083 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||||||| ||||| || |||||||| ||| || | || ||| Sbjct 1303082 CAGCAAAGACTGATCTTTGCTGGCAAGAAACTGGAAGATGGACGTACTTTGTCTGACTAC 1303023 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 ||| |||||||||| ||||||||||| | ||||| Sbjct 1303022 AATGTTCAAAAGGAGTCTACTCTTCATCTTGTGTT 1302988 >seq18140 Length=5205659 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||| | ||||| | || || || ||||| ||| ||| |||||| Sbjct 3938808 AAAATGCAGATTTTCGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCC 3938749 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || ||| | | || | ||| || || ||||| ||||| | || ||| Sbjct 3938748 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 3938689 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||||| | ||||| ||| ||||||| ||| || | || ||| Sbjct 3938688 CAGCAAAGACTGATCTTTACTGGCAAGCAACCGGAAGATGGACGTACTTTGTCTGACTAC 3938629 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || ||||| ||||| ||||||||||| | ||||| Sbjct 3938628 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTT 3938594 >seq16297 Length=2103431 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||||| ||||| | || || || ||||| ||| | | ||| || Sbjct 675079 AAAATGCAGATTTTCATGAAAACCCTTACAGGGAAGACCATCACCCTCAAGGTTGAATCC 675138 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || ||| | | || | ||| || || ||||| ||||| | || ||| Sbjct 675139 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 675198 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAA--ACTATGGCCGATT 25209 || |||||| | |||||||| ||||| ||| ||||||| || | ||| || | || | Sbjct 675199 CAGCAAAGATTGATCTTTGCTGGCAAGCAACTGGAAGA--CCGACGTACTCTGTCTGACT 675256 Query 25210 ACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 |||| |||| |||||| ||||||||||| | ||||| Sbjct 675257 ACAACATTCGAAAGGAGTCTACTCTTCATCTTGTGTT 675293 >seq27641 Length=16599674 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| ||||| | || ||||| |||||||| |||||||| ||||| ||| ||||| Sbjct 1039127 GATAAGGAAGGCATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAA 1039186 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 || | ||| || | || ||||| ||||||||||| ||||||||||| Sbjct 1039187 GACGGACATACTTTGTCTGACTACAACATTCAAAAGGAGTCTACTCTTCA 1039236 >seq20631 Length=3741062 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || ||||| ||||| | |||| || || || ||| | | |||||| Sbjct 1077859 AAAATGCAGATTTTCATGAAAACTCTTACGGAGAAGACTATCACCCTCCAGGTTGAACCC 1077918 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 |||| ||| | | | ||| || || ||||| ||||| | || ||| Sbjct 1077919 TCAGATACGAAAGAAAACGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 1077978 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||| ||| ||||| ||| | |||||| ||| | | || ||| Sbjct 1077979 CAGCAAAGACTGATCTATGCTGGCAAGCAACTAGAAGATGGACGTACTCTCTCTGACTAC 1078038 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || ||||||||||| ||||||||||| ||||||| Sbjct 1078039 AACATTCAAAAGGAGTCTACTCTTCATCTGGTGTT 1078073 >seq15807 Length=9314881 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 |||||||| || || | ||||| | | ||| || ||||| ||| ||| || || Sbjct 6716423 AAAATGCAGATTTTTGTGAAAACCCTTATGGGGAAGACCATCACCCTCGAGGTTGAGCCT 6716482 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 |||| ||| | | || | ||| || || ||||| ||||| | || ||| Sbjct 6716483 TCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTTCTGAT 6716542 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||||||| |||| ||| |||||||| ||| || | || ||| Sbjct 6716543 CAGCAAAGACTGATCTTTGCTAGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTAC 6716602 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || ||||||||||| |||| |||||| | ||||| Sbjct 6716603 AACATTCAAAAGGAGTCTATTCTTCATCTTGTGTT 6716637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410651999519708