Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq12486 248 6e-61 seq19633 140 2e-28 seq16616 86.0 4e-12 >seq12486 Length=6174982 Score = 248 bits (274), Expect = 6e-61 Identities = 508/740 (69%), Gaps = 14/740 (2%) Strand=Plus/Plus Query 96898 TAAACAGCCATGGGCATTTTTAT-GCTAGGGTAAGGGTTATAGTTTTCCAGAATAATGTC 96956 ||||||||||| |||||| || ||| || | || || || ||| | ||| ||| Sbjct 2654182 TAAACAGCCATTTCCATTTTAATAGCT-GGATGTGGATTGTACCCTTCAACCTTAAAGTC 2654240 Query 96957 ATTTGCTTTAAAATCATCAATAGATGCAATCTTTCTGGCAAACTTTAGTGTTGGGAAAGG 97016 | | ||| || |||||||| ||| |||| || ||| ||| |||||||||| Sbjct 2654241 TTCAGTTTTGAAGTCATCAATTTTCTCAACTTTTCGAAGAATCTTGAGTTTTGGGAAAGG 2654300 Query 97017 CCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGC 97076 ||||| |||| |||||| | | || | || |||||||||| ||||| || || Sbjct 2654301 TCTGGGTTCTCGCTGAAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGTAAATATGTGC 2654360 Query 97077 ATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACA 97136 |||||| ||||| || | ||| || || || | | |||| || |||||||| | Sbjct 2654361 ATCTCCCAAAGTATGTACAAAGTCACCCGGCTTCAGGCCCGTGATGTGCGCGATCATGTA 2654420 Query 97137 AGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCT 97196 | | || | ||||| || ||||| |||||||| ||||| || || || | |||| Sbjct 2654421 CATGAGCAGGGCCTAGCTGGCGATGTTGAAAGGCACACCTAGGCCGATGTCTCCCGATCG 2654480 Query 97197 TTGATATAACTGACAGGAAAGCTTTCCA-TCACACACATAAAACTGACTCAATACATGAC 97255 || || | ||| ||||| |||| ||| |||| ||| || ||||| | | |||| | Sbjct 2654481 CTGGTACAGCTGGCAGGACAGCTCACCATTCAC-CACTTAGAACTGGCAGAGGGCATGGC 2654539 Query 97256 AGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTC 97315 | || |||| |||||| |||| |||| |||||||| ||| | | ||||||| Sbjct 2654540 ATGGAGGCAGCGCCATCAGAGGAAGATCTCTTGGATTCCAAGTGCACGTGATGATTCTTC 2654599 Query 97316 TATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTT--AATTGATCAACGCCTTC 97373 | || ||||| || | ||||| | ||| | || |||| | ||| ||||| |||| Sbjct 2654600 TGTCATCAGGGTTGGTTTTGATGGTGTCAATCA-CT-CTTTGCAGTTGGTCAACTCCTTT 2654657 Query 97374 TCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCC 97433 ||| ||||| | | | || |||||||| |||||||||||||||||||| || Sbjct 2654658 TCCTGAATAATCTGAATCCATATCT--CTATTCTGCCCCAAAATGCCTCCATTGGAAGCC 2654715 Query 97434 ATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAA-ACCAAGCTTATCTAAATAGG 97492 |||||| || || | ||| ||||||||||| | |||| |||||| |||| | | | | Sbjct 2654716 ATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGC-TATCCAGA-AAG 2654773 Query 97493 ACCTAG-ATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCTTTGCTGTCA 97551 | | | ||||||| |||||||| || | ||| || | | ||||||| | Sbjct 2654774 TCTTGGTATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGGCAGCTCTTCAGCATTT 2654833 Query 97552 GTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTA 97611 || ||||| |||||||||||||||| || |||| |||||| |||| || | | Sbjct 2654834 GTGGATCCCTTGATAAACCACAACAACTCCTCCAAAACACCCTTCCAGAACAGATGTTCG 2654893 Query 97612 GTTGTTAAGAGAGGAAAATC 97631 ||||||| |||||||| || Sbjct 2654894 GTTGTTAGCAGAGGAAATTC 2654913 Score = 158 bits (174), Expect = 8e-34 Identities = 285/408 (70%), Gaps = 8/408 (2%) Strand=Plus/Plus Query 97198 TGATATAACTGACAGGAAAGCTTTCCAT-CACACACATAAAACTGACTCAATACATGACA 97256 || || | ||| ||||| |||| || | ||| ||| || ||||| | | |||| || Sbjct 331989 TGGTACAGCTGGCAGGACAGCTCACCGTTCAC-CACTTAGAACTGGCAGAGGGCATGGCA 332047 Query 97257 GGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCT 97316 || |||| |||||| |||| |||| ||||||||| ||||| | |||||||| Sbjct 332048 TGGAGGCAGCGCCATCAGAGGAAGATCTCTTGGATTCCAAGCGCACATGATGATTCTTCT 332107 Query 97317 ATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTT--AATTGATCAACGCCTTCT 97374 || ||||| || | ||||| | ||| | || |||| | ||| ||||| |||| | Sbjct 332108 GTCATCAGGGTTGGTTTTGATGGTGTCAATCA-CT-CTTTGCAGTTGGTCAACTCCTTGT 332165 Query 97375 CCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCA 97434 || ||||| | | | || |||||||| |||||||||||||| ||||| ||| Sbjct 332166 CCTGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCA 332225 Query 97435 TAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAA-ACCAAGCTTATCTAAATAGGA 97493 ||||| || || | ||| ||||||||||| | |||| |||||| |||| | | || Sbjct 332226 TAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGC-TATCCAGAAAGTC 332284 Query 97494 CCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGT 97553 | |||||||| |||||||| || | ||| || | | |||||||| | || Sbjct 332285 TCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGT 332344 Query 97554 AGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAA 97601 ||||| |||||||||||| ||| || |||| |||||| |||| || Sbjct 332345 GGATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCTTCCAGAA 332392 >seq19633 Length=3468624 Score = 140 bits (154), Expect = 2e-28 Identities = 244/347 (70%), Gaps = 15/347 (4%) Strand=Plus/Minus Query 97290 ATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTAT 97349 |||||||| ||||| | |||||||| || ||||| || | ||||| | ||| | Sbjct 1960017 ATTCCAAGTGCACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCA- 1959959 Query 97350 CTGCTTT--AATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGAC--CTTGATATT 97405 || |||| | ||| ||||| |||| ||| ||||| || || | || |||| Sbjct 1959958 CT-CTTTGCAGTTGGTCAACTCCTTGTCCTGAATAAT----CTGAATCCATCTCTGTATT 1959904 Query 97406 CTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTAT 97465 |||| |||||||||||||| ||||| |||||||| || || | ||| |||||| || Sbjct 1959903 CTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCT---CTGG 1959847 Query 97466 CACAGAAACC-AAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACA 97524 | |||| || ||||| ||| | | || | |||||||| |||||||| || | ||| Sbjct 1959846 CGGAGAATCCCAAGCT-ATCCAGAAAGTCTCAGGATCCATTGGCATCCCAGATTTTCACT 1959788 Query 97525 CCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCC 97584 || | || |||||||| | || ||||| |||||||||||| |||||| ||| Sbjct 1959787 CCCTTGGATGACAGCTCTTTAGCATTTGTGGATCCCTTGATAAACCACAGCAATTCCTCC 1959728 Query 97585 ACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAATC 97631 | |||||| |||| || | | || ||||| | |||||||| || Sbjct 1959727 AAAACACCCTTCCAGAACAGACATTTGGTTGTCAGCAGAGGAAATTC 1959681 >seq16616 Length=7972016 Score = 86.0 bits (94), Expect = 4e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 |||||||| ||||| |||||||| ||||| |||||||| || || | ||| ||||||||| Sbjct 2016364 TATTCTGCCCCAAAGTGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCT 2016423 Query 97462 CTATCACAGAA-ACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTG 97520 || | |||| |||||| |||| | | | | |||||||| |||||||| || | Sbjct 2016424 CTGGCGGAGAATCCCAAGC-TATCCAGAAAATCTCGGGATCCATTGGCATCCCAGATTTT 2016482 Query 97521 CACACC 97526 ||| || Sbjct 2016483 CACTCC 2016488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346661763191540