Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq13033 98.7 1e-15 seq21427 89.7 8e-13 seq9996 87.8 3e-12 >seq13033 Length=3880709 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| || || || | ||| | || | | | Sbjct 3665409 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 3665350 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||||||||| || || ||||| |||||||| || Sbjct 3665349 GACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAG 3665290 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || ||||| | |||||| | || || | ||| || || Sbjct 3665289 CAGCGTCTGATATTTGCTGGCAAACAGCTGGAGGATGGCCGCACGCTCTCAGACTACAAC 3665230 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 || || ||||| || || |||| |||| | || | |||||||| |||| Sbjct 3665229 ATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGGTGGCATTA 3665178 >seq21427 Length=8993756 Score = 89.7 bits (98), Expect = 8e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||||| |||||||| || || || | ||| | ||| | | | Sbjct 3259850 ATGCAGATCTTTGTGAAGACACTCACAGGCAAGACCATCACCCTTGAGGTAGAATCCAGT 3259791 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||||||||| || || ||||| ||| |||| || Sbjct 3259790 GACACCATTGAGAATGTCAAAGCCAAAATTCAAGAGAAGGAGGGTATCCCATCTGACCAG 3259731 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 | | || || ||||| |||||||| | |||| | | || || | ||| || || Sbjct 3259730 TAGTGTCTGATCTTTGCCGGAAAACAGATGGAGGGTGGCCGCACTCTCTCAGACTACAAC 3259671 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || || ||||| | || |||| |||| Sbjct 3259670 ATCCAGAAAGAGTTCACCCTGCACCTGGT 3259642 >seq9996 Length=19681183 Score = 87.8 bits (96), Expect = 3e-12 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| | ||| | ||||| || || ||||| || || || | ||| |||| | | | Sbjct 16335315 ATGCAGGTGTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 16335256 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||||||||| || |||||||| |||||||| || Sbjct 16335255 GACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAAGGTATCCCACCTGACCAG 16335196 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || || ||||| | ||||| | |||||| | || || | ||| || || Sbjct 16335195 CAGCATCTGATATTTGCTAGCAAACAGCTGGAGGATGGCCG--CAGTCTCAGACTACAAC 16335138 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 || || ||||| || || |||| |||| | || | ||||||| |||| Sbjct 16335137 ATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGTGAGGTGGCATTA 16335086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755182883769600