Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq20631 102 1e-16 seq16297 102 1e-16 seq4225 98.7 1e-15 seq23666 95.1 2e-14 seq5696 95.1 2e-14 seq24834 93.3 6e-14 seq20084 93.3 6e-14 seq26070 89.7 8e-13 seq19202 89.7 8e-13 seq9574 89.7 8e-13 seq20821 87.8 3e-12 seq18140 86.0 9e-12 seq13726 86.0 9e-12 seq9653 86.0 9e-12 seq20843 84.2 3e-11 >seq20631 Length=3741062 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||| | | |||||| || |||| ||| | |||||| || ||| || || || || || || Sbjct 1078088 CCATCACGAAGTCTCAACACCAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAGA 1078030 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||| | | ||| |||| ||| || |||||| | |||| |||||||||||| ||||| Sbjct 1078029 GAGAGTACGTCCATCTTCTAGTTGCTTGCCAGCATAGATCAGTCTTTGCTGATCAGGAGG 1077970 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 1077969 AATTCCTTCCTTATCCTG 1077952 >seq16297 Length=2103431 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || || || || || || Sbjct 675308 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTCGA-ATGTTGTAGTCAGA 675250 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||| | | || || | ||| || |||||||| ||||||||||||||||| ||||| Sbjct 675249 CAGAGTACGTCGGTCTTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAGG 675190 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 675189 AATTCCTTCCTTATCCTG 675172 >seq4225 Length=2700854 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||| | | |||||| || || | ||| | |||||| || ||| || || || | || || Sbjct 1776335 CCATCACAAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGCAGTCAGA 1776393 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||| | ||||| || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 1776394 CAGAGTACGCCTATCTTCCAGTTGCTTGCCAGCAAACATCAGTCTTTGCTGATCAGGAGG 1776453 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 1776454 AATTCCTTCCTTATCCTG 1776471 >seq23666 Length=5806929 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| || || | ||| | |||||| || || || || || || || Sbjct 828674 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 828733 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || | ||| || |||||||| |||| |||||| ||||| |||||| Sbjct 828734 AGAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGGTGATCAGGAGGA 828793 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 828794 ATTCCTTCCTTATCCTG 828810 >seq5696 Length=1770758 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| || ||||||| |||| ||||| | | |||| || ||| ||| | |||| Sbjct 498631 TTCCTTGTGGGTGTTATGGAAGAGTAGCTTCACGGTCTGGCTTGGCTGCAAAACACTTTA 498572 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 ||||| | |||||||| || || || ||||||| |||||||||||| || || || | | Sbjct 498571 TTGATGTAGGAGCTGGTGTCATAGATGAAGATTGTAGAGGAAATGTTGGTGTTGTACTGT 498512 Query 10549 TTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATAT 10608 ||||| | || ||| | ||| | | || | ||| ||| |||| | || | || | Sbjct 498511 TTAATTTTGGCAAAGAAAAGTTTGAAGTCAAAAAAGGTGATCGAATTGCACAGCTCATTT 498452 Query 10609 GTGAAAAAATTTTATATCCTAAAAT 10633 ||||| ||||| || || |||| Sbjct 498451 GTGAACGGATTTTTTACCCAGAAAT 498427 Score = 86.0 bits (94), Expect = 9e-12 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 146059 AAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCT 146118 |||||| || || | ||| | |||||| || | || || || || || || | ||| | Sbjct 1424196 AAGTCTCAACAC-AGATGAAGAGTAGACTCCTCTGA-ATGTTGTAGTCAGACAAAGTACG 1424139 Query 146119 GCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTC 146178 | ||| || | ||| || |||||||| |||| |||||||||||| |||||||||||||| Sbjct 1424138 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTC 1424079 Query 146179 TTTATCTTG 146187 ||||| || Sbjct 1424078 CTTATCCTG 1424070 >seq24834 Length=2526834 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | | |||| || || | ||| | ||| || || ||| || || || || || || Sbjct 598458 CCACCACAATGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 598516 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||| | | ||| || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 598517 CAGAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 598576 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 598577 AATTCCTTCCTTATCCTG 598594 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | | |||| || || | ||| | ||| || || ||| || || || || || || Sbjct 2359076 CCACCACAATGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 2359018 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||| | | ||| || | ||| || |||||||| |||| |||||| ||||| ||||| Sbjct 2359017 CAGAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGTTGATCAGGAGG 2358958 Query 146170 AATTCCTTCTTTA 146182 ||||||||| ||| Sbjct 2358957 AATTCCTTCCTTA 2358945 >seq20084 Length=6261642 Score = 93.3 bits (102), Expect = 6e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 146059 AAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTC 146117 ||||||||| || | ||| | |||||| || ||| || || || || || || | ||| | Sbjct 3809752 AAGTCTTAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAGACAAAGTAC 3809810 Query 146118 TGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTT 146177 | ||| || | ||| || ||||||| |||| |||||||||||| ||||||||||||| Sbjct 3809811 AACCATCTTCCAGTTGCTTGCCAGCAATGATCAGTCTTTGCTGATCAGGAGGAATTCCTT 3809870 Query 146178 CTTTATCTTG 146187 | ||||| || Sbjct 3809871 CCTTATCCTG 3809880 >seq26070 Length=4351986 Score = 89.7 bits (98), Expect = 8e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 146059 AAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCT 146118 |||||| || || | ||| | |||||| || || || || || || || ||||| | Sbjct 512817 AAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAGAGTACG 512758 Query 146119 GCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTC 146178 | || || | ||| || |||||||| |||| |||||||||||| |||||||||||||| Sbjct 512757 TCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTC 512698 Query 146179 TTTATCTTG 146187 ||||| || Sbjct 512697 CTTATCCTG 512689 >seq19202 Length=12282305 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| || || | ||| | |||||| || || || || || || || Sbjct 12257038 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 12257097 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || | ||| || |||||||| |||| ||||||||||| |||||| Sbjct 12257098 AAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGGCTTTGCTGATCAGGAGGA 12257157 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 12257158 ATTCCTTCCTTATCCTG 12257174 >seq9574 Length=15603535 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| || || | ||| | ||| || || || || || || || || Sbjct 15090426 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAC 15090367 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || ||| || |||||||| |||| |||||||||||| |||||| Sbjct 15090366 AGAGTACGTCCATCTTCCGGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 15090307 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 15090306 ATTCCTTCCTTATCCTG 15090290 >seq20821 Length=1718789 Score = 87.8 bits (96), Expect = 3e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 146059 AAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTC 146117 |||||| || || | ||| | |||||| || ||| || | ||| || || || | ||| | Sbjct 1302981 AAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ACATTGTAGTCAGACAAAGTAC 1303039 Query 146118 TGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTT 146177 | ||| || | || || |||||||| |||| |||||||||||| ||||||||||||| Sbjct 1303040 GTCCATCTTCCAGTTTCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTT 1303099 Query 146178 CTTTATCTTG 146187 | ||||| || Sbjct 1303100 CCTTATCCTG 1303109 >seq18140 Length=5205659 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| || || | ||| | |||||| || || || || || || || Sbjct 3938579 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 3938638 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || ||| || |||| ||| |||| |||||||||||| |||||| Sbjct 3938639 AAAGTACGTCCATCTTCCGGTTGCTTGCCAGTAAAGATCAGTCTTTGCTGATCAGGAGGA 3938698 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 3938699 ATTCCTTCCTTATCCTG 3938715 >seq13726 Length=17113052 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| || || | ||| | |||||| || || || || || | || Sbjct 5590443 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTTAGAC 5590502 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | ||| || | ||| ||||||| ||| |||| |||||||||||| |||||| Sbjct 5590503 AAAGTATGTCCATCTTCAAGTTGCTTTCCAGAAAAGATCAGTCTTTGCTGATCAGGAGGA 5590562 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 5590563 ATTCCTTCCTTATCCTG 5590579 >seq9653 Length=10725 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| || || | ||| | |||||| || || || || || || || Sbjct 2136 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGAATCCTTCTGAATGTTGTAGTCAGAC 2077 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || | ||| || |||||||| || | ||||||||||| |||||| Sbjct 2076 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATTAGTCTTTGCTGATTAGGAGGA 2017 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 2016 ATTCCTTCCTTATCCTG 2000 >seq20843 Length=21849567 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| |||||| || || | ||| | |||||| || ||| || |||| || || || Sbjct 15156774 CCACCAGGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAC-TATTGTAGTCAGA 15156832 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | || || || | ||| || |||||||| |||| |||||||||||| |||| Sbjct 15156833 CAAAGTACGTCTGTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGA 15156892 Query 146170 AATTCCTTCTTTATCTTG 146187 |||| |||| ||||| || Sbjct 15156893 AATTTCTTCCTTATCCTG 15156910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743257596618240