Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq13033 123 2e-23 seq16305 122 6e-23 seq2233 113 3e-20 seq7161 109 4e-19 seq21427 96.9 2e-15 seq17446 96.9 2e-15 seq26070 91.5 1e-13 seq9996 86.0 4e-12 seq18305 84.2 1e-11 seq20385 82.4 5e-11 seq15340 82.4 5e-11 seq6752 82.4 5e-11 >seq13033 Length=3880709 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | || |||||||| ||||||||||| || Sbjct 3665183 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 3665242 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||| ||| ||||| || || || || ||||||||||| || Sbjct 3665243 AGCGTGCGGCCATCCTCCAGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGGG 3665302 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| || ||| ||||| | || | || | || | | ||||| Sbjct 3665303 ATACCCTCCTTGTCTTGAAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 3665361 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || | |||||||| ||||| ||||| || |||||||||||||||||| || Sbjct 3665362 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATCTCT 3665413 >seq16305 Length=36878 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||||| | | || |||||||| |||||||| || || Sbjct 3042 CCACCCCTCAGACGCAGGACCAGGCGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 3101 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| |||| |||||||||||| || ||||||| ||||||||||| ||| Sbjct 3102 AGAGTGCGGCCGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGAGGGGG 3161 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || || || || ||||| ||| | || | || | || | | || || Sbjct 3162 ATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 3221 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||||||||| || ||||| ||||||||||| Sbjct 3222 TCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 3268 >seq2233 Length=2295209 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||||||| | || |||||||| ||||||||||| || Sbjct 1388463 CCCCCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 1388404 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| |||||||||||| || ||||||| |||||||||| ||| Sbjct 1388403 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 1388344 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||| || ||||| ||| | || | || | || | | || || Sbjct 1388343 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTCCACC 1388284 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || | ||| |||||||| || || ||||| ||||||||||| Sbjct 1388283 TCCAGGGTTACGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1388237 >seq7161 Length=8644359 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||| | | |||||||||||| | || |||||||| ||||||||||| || Sbjct 6018498 CCACCTCGCTGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 6018557 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || | || |||| ||| |||| || || || || ||||||||||| || Sbjct 6018558 AGCGTGTGGCCATCCTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGG 6018617 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| || ||| ||||| | || | || | || | | ||||| Sbjct 6018618 ATACCCTCCTTGTCTTGAAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 6018676 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || | |||||||| ||||| ||||| || |||||||||||||||||| || Sbjct 6018677 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATCTCT 6018728 >seq21427 Length=8993756 Score = 96.9 bits (106), Expect = 2e-15 Identities = 156/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 |||||||||||| | || |||||||| ||||||||||| || || ||| | | Sbjct 3259638 CAGCACCAGGTGCAGGGTGAACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCACC 3259697 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGT 34295 |||| ||| || || || || || || | || |||||| || ||| | | |||||| | Sbjct 3259698 CTCCATCTGTTTTCCGGCAAAGATCAGACACTACTGGTCAGATGGG-ATACCCTCCTTCT 3259756 Query 34296 CGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354 | || ||| ||||| | || | || | || | ||||| || || | |||||| Sbjct 3259757 CTTGAAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGATTCTACCTCAAGGGTGATG 3259815 Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || ||||| ||||| || |||||||||||||||||| || Sbjct 3259816 GTCTTGCCTGTGAGTGTCTTCACAAAGATCTGCATCTCT 3259854 >seq17446 Length=896517 Score = 96.9 bits (106), Expect = 2e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||||||| | || |||||||| |||||||| || || Sbjct 702413 CCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 702354 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| |||||||||||| || ||||||| |||||||||| ||| Sbjct 702353 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 702294 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||| || ||||| ||| | || | || | || | | || || Sbjct 702293 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACT 702234 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAG 34368 |||| |||||||| ||||||||||| Sbjct 702233 TCCAGGGTGATGGTCTTGCCGGTGAG 702208 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTC-GGACAGC-TGACGGTCGTCGTCCAACTGCTTGCCTGCGA 34256 |||||||| ||||||||||| ||| | || |||| | || | |||||||||||| | Sbjct 702146 TCTTTCTGGATGTTGTAGTCAGGAAATAGTGCGGGTCTT--TCTAGCTGCTTGCCTGCAA 702089 Query 34257 AAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGAT 34316 | ||||||| |||||||||| ||| | || ||||| || ||||| ||| | || Sbjct 702088 AGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACAT 702029 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | | || || |||| |||||||| ||||| || || || |||| Sbjct 702028 TTTCGATGGTGTCACTAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 701969 Query 34377 CAAAGATCTGCAT 34389 | ||||||||||| Sbjct 701968 CGAAGATCTGCAT 701956 >seq26070 Length=4351986 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231 || |||| ||| || || | |||| || ||||| ||||||||||| ||||| ||| Sbjct 512816 AGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAGAGTACGT 512757 Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291 |||| |||| |||||||| || || || || | ||||| || || | | ||| Sbjct 512756 CCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCC 512697 Query 34292 TTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTG 34351 || || ||||| ||||| || |||||| ||| | ||| || || | ||| Sbjct 512696 TTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTCAACCTCGAGGGTG 512637 Query 34352 ATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || || |||||||| || |||||||| Sbjct 512636 ATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 512599 >seq9996 Length=19681183 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | |||||||||||| | || |||||||| ||||||||||| || Sbjct 16335091 CCACCTCACAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 16335150 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| ||| | || |||| ||| |||| || || || || |||||||||| || Sbjct 16335151 A-CTG-CGGCCATCCTCCAGCTGTTTGCTAGCAAATATCAGATGCTGCTGGTCAGGTGGG 16335208 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| || ||| ||||| | || | || | || | | || || Sbjct 16335209 ATACCTTCCTTGTCTTGAAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCAAC 16335267 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| ||||| || |||||||| | |||||| Sbjct 16335268 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAACACCTGCAT 16335315 >seq18305 Length=10871756 Score = 84.2 bits (92), Expect = 1e-11 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 |||||||||||| | || |||||||| ||||||||||| || || | | | | Sbjct 4253454 CAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCAGCCATT 4253513 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| || ||||| || || || || | ||||||||| || | | ||||||||| Sbjct 4253514 CTCCAGGTGTTTGCCGGCAAACATCAGACACTGCTGGTCAGGTGGGATACCCTCCTTGTC 4253573 Query 34297 GGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||| ||| | | || | || | || | | | ||| || | ||||||| Sbjct 4253574 TTGAAT-TTTGGCTCTGACATTCTCAATGGTGTCACTAGTCTTGACCTCAAGGGTGATGG 4253632 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 | ||||| |||||||| ||||||||||||| |||| || Sbjct 4253633 TCTTGCCTGTGAGAGTCTTCACAAAGATCTACATCTCT 4253670 >seq20385 Length=15889662 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| |||||||||| || || | | | || | || |||||||||||| || Sbjct 15770383 TCTTTCTGGGTGTTGTAGTCAGAAAGAGTGCAGCCATCTTTCAGCTGCTTGCCTGCAAAG 15770442 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||||| ||||||||| ||| | || ||||| || ||||| ||| | || Sbjct 15770443 ATGAGCCTCTGCTGGTCAGTGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTT 15770502 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCG---TGATGGTTTTGCCGGTGAGAGTTTTC 34375 || | || | | || || |||| | ||||||| |||||| | || || ||| Sbjct 15770503 TAGATGGTGTCACTAGGCTCCACCTCCAGGGTGATGATGGTCTTGCCGATCAGGGTCTTC 15770562 Query 34376 ACAAAGATCTGCAT 34389 |||||||||||||| Sbjct 15770563 ACAAAGATCTGCAT 15770576 >seq15340 Length=14285470 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/227 (68%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || |||| ||| || | | ||| || ||||| ||||||||||| ||| Sbjct 11297477 CCACCACGAAGTCTCAACACAAGATAAAGCGTAGACTCCTTCTGAATGTTGTAGTCAGAC 11297418 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| || || |||| |||||||| || ||| | || | ||||| || || Sbjct 11297417 AAAGTACGTTCATCTTCCAGTTGCTTGCCAGCAAAAGTCAGTCTTTGCTGATCAGGAGGA 11297358 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||| || ||| | ||||| || | |||||| ||| | | ||| || Sbjct 11297357 ATTCCTTCCTTATCCTGGATC-TGGCCTTTACATTGTCTATCGTATCCGAGGGTTCAACC 11297299 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || || || |||||||| || |||||||| Sbjct 11297298 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 11297252 >seq6752 Length=2939 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTC 34236 || || ||||| | ||| || ||||| ||||||||||| || | | || || | || Sbjct 2680 AGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGATAAGGTG-CGCCCATC 2738 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| |||||| || || || || | || ||||||||| || | || |||||||| Sbjct 2739 TTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTC 2798 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 |||||| ||| | | | || | || | | ||||| || | |||||||| Sbjct 2799 TTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGT 2858 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || ||||| || || ||||| |||||||||||| Sbjct 2859 CTTACCGGTCAGGGTCTTCACGAAGATCTGCATC 2892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322958121360320