Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq12132 306 3e-78 seq23499 269 2e-67 seq22719 266 3e-66 seq18140 111 1e-19 seq27380 102 8e-17 >seq12132 Length=2475592 Score = 306 bits (338), Expect = 3e-78 Identities = 623/912 (68%), Gaps = 20/912 (2%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||| || ||| ||| | || ||| ||| ||| || | ||||||| ||| ||| Sbjct 57351 TTTAGAAGTCAGCATCCAAAGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATCC 57292 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 | ||||| || | |||||||| |||||||| || || | |||||| | ||||||||| | Sbjct 57291 TCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTATCCTTCCAGTGAAATATTCT 57232 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC---ATCCCAATTCCAACA 16061 ||||||| ||||| ||||| | | || | | | | || | |||| ||||| || Sbjct 57231 CCATAAAGTCAAATGGATTCTCT--ACTCT-GAAAACCTTGCTAAAACCCAGTTCCAGCA 57175 Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTA 16121 | ||| | |||||||| || || || || ||||||| | |||||||| || || | Sbjct 57174 TAAGTCTGCCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAGTTCATCCCAATGA 57115 Query 16122 ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTA 16181 || ||||| | || || || | || | | |||||| ||| || | || |||| Sbjct 57114 GCTTCACAGGCAAAGCCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCATTGATAATTA 57055 Query 16182 TATCTCTTACTACACTATT-TAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCA 16240 | || | |||| | || | | | || || || || |||||| ||||| | |||||| Sbjct 57054 TTTCGCATACT-CTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATCAGGCAAGCA 56996 Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300 |||||||| || || || || || || || || | || || |||||||| || || ||| Sbjct 56995 AAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGC 56936 Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360 || ||||||||||| || | ||| ||||| | ||||| |||||||||||||| || ||| Sbjct 56935 ATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCT 56876 Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTT--CTAtttttactttctatcc 16418 || ||||| ||||| || || || ||||| || || || ||| | | | |||| Sbjct 56875 TCCACTGCAGCAAAGGCTACGCG-CGTTCACCATAGGTAGCCTGTTTGTCCC--CAATCC 56819 Query 16419 attttttagcccaatttg-ctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAAT 16477 | ||||||| || ||| ||| ||||| ||| | || || ||||| || Sbjct 56818 AGCGCAAGGCCCAATCTGACTTCTTG----ACACAAGGCATCGTTTCAATGGCATTGAAG 56763 Query 16478 AAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCT 16537 | | | | |||| ||| |||| || ||||| || || || | |||||||||||| Sbjct 56762 AGAAATTCCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCA 56703 Query 16538 GAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGT 16597 ||||| || || ||||| || || || |||||||| || || | ||||| | || || Sbjct 56702 GAATGTATGTTTTCCATGGCAATTTGGAAACCATAGAAACAGCGGGCTTCTGTAATCTGA 56643 Query 16598 ACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAA 16657 ||||| || ||| | || | |||||||| || ||||| |||| || |||||||| Sbjct 56642 ACTTCTTGGTTAAATCGCTCCACCAAGTTTTCATTTACTATGTCATCACTTGCTGCAAAT 56583 Query 16658 AACGCAAGTATGTGTTTAATAAAAtttttttCGT-TATCTGAAAGTTTTAACCAGTCAGA 16716 || || || | ||| ||||| | | | || | || | | || ||||| | Sbjct 56582 AAAGCCAGAACGTGGGATATAAAGTATCTCTCCTCGGGCTTCAGGGATT-CCCAGTGCCA 56524 Query 16717 AAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATA 16776 || || || || | || ||||| || | ||||| || || || | ||||| ||||| Sbjct 56523 AATGTCCTTGGACAGCTCCACCTCCTCGGCGGTCCAGAAGGAGGCCTCCGCCTTCTTATA 56464 Query 16777 CATTTTCCATAT 16788 ||| | ||| || Sbjct 56463 CATGTGCCAGAT 56452 >seq23499 Length=2348749 Score = 269 bits (298), Expect = 2e-67 Identities = 540/793 (68%), Gaps = 12/793 (2%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||| || ||| ||| | | ||| ||| ||| || ||||||||| ||| ||| Sbjct 2215561 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGATTTGACATCACTCCCATCC 2215620 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 | ||||| |||| |||||| | |||||||| || || |||||||| | ||||||||| | Sbjct 2215621 TCTGATACTCACCTACTCTCGTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCT 2215680 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC---ATCCCAATTCCAACA 16061 ||||||| ||||| ||||| | | || | | | | || | |||| ||||| || Sbjct 2215681 CCATAAAGTCAAATGGATTCTCT--ACTCT-GAAAACCTTGCTAAAACCCAGTTCCAGCA 2215737 Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTA 16121 | ||| || |||||||| | || | || ||||||| | |||||||| || | | Sbjct 2215738 TAAGTCTGTCTGCCACAAACCCAATGTGTTGCTTCATTAGAGTGCAGTTCATCCCAGTGA 2215797 Query 16122 ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTA 16181 || ||||| | || || || | || | | |||| ||| || | || |||| Sbjct 2215798 GCTTCACAGGCAAGGCCTCAGTGAGGAACTCCTGCTCTAACCGAACAGCATTGATAATTA 2215857 Query 16182 TATCTCTTACTACACTATT-TAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCA 16240 | |||||||| | || | | | || || || | |||||| ||||| | |||||| Sbjct 2215858 TTTCTCTTACC-CTCTCCTCTGATGGTTTGTGTACTGGGTGTTTGAACATCAGGCAAGCA 2215916 Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300 |||||||| || || || || || || || || | || || |||||||| || || ||| Sbjct 2215917 AAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGC 2215976 Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360 || ||||||||||| || | ||| ||||| | ||||| |||||||||||||| || ||| Sbjct 2215977 ATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAAATGCCT 2216036 Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAtttttactttctatcc 16418 || ||||| ||||| || || | || ||||| || || || ||| | | | ||| Sbjct 2216037 TCCACTGCAGCAAAGGCTACGACACGTTCACCATAGGTAACCTCTTTGTCC--CCAGTCC 2216094 Query 16419 attttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA 16478 | | ||||| | ||| || | || ||||| ||| | || | ||||| || | Sbjct 2216095 AGTGCAAGGCCCAGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAACGGCATTGAAGA 2216154 Query 16479 AATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538 | | | |||| || |||| || ||||| || || || | |||||||||||| | Sbjct 2216155 GAAATTCCCTTTCGCTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAG 2216214 Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598 |||| || || ||| | || || || || ||||| || || | ||||| | || || | Sbjct 2216215 AATGTATGTTTTCCCTGGCAATTTGGAATCCATAGAAACAGCGGGCTTCTGTAATCTGAA 2216274 Query 16599 CTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAA 16658 | || | ||| | || | |||||||| || ||||| || | || |||||||| | Sbjct 2216275 CCTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCCTTACTCGCTGCAAAGA 2216334 Query 16659 ACGCAAGTATGTG 16671 | || || | ||| Sbjct 2216335 AAGCCAGAACGTG 2216347 >seq22719 Length=8987742 Score = 266 bits (294), Expect = 3e-66 Identities = 456/654 (70%), Gaps = 12/654 (2%) Strand=Plus/Minus Query 15913 ATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAA 15972 ||| ||| || | ||||||| ||| ||| | ||||| || | |||||||| ||||| Sbjct 8555325 ATTCTCTGTTGGACTTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAA 8555266 Query 15973 GAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACA 16032 ||| || || |||||||| | ||||||||| |||||||| |||| ||||| | | || Sbjct 8555265 GAAGTTAGTCTTTCCTTCCAGTGAAATATTCTCCATAAAGGCAAATGGATTCTCT--ACT 8555208 Query 16033 ATAGTATTTATCGC---ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATA 16089 | | | | || | |||| ||||| || | ||| || |||||||| || || || Sbjct 8555207 CT-GAAAACCTTGCTAAAACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTA 8555149 Query 16090 CTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 || ||||||| | || ||||| || || | || ||||| | || || || | || Sbjct 8555148 TTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAA 8555089 Query 16150 AtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATT-TAACGGAG 16208 | | |||||| ||| || | || ||||| ||||||||| | || | | | || Sbjct 8555088 CTCCTGTTCTATCCGAACAGCATTCATAATTATTTCTCTTACT-CTCTCCTCTGATGGTT 8555030 Query 16209 GGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTAC 16268 || || || |||||| ||||| | |||||||||||||| || || || || || || | Sbjct 8555029 TGTGTACTATGTGTTTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGC 8554970 Query 16269 TTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATA 16328 | || | || || |||||||| || || ||||| ||||||||||| || | ||| |||| Sbjct 8554969 TAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATA 8554910 Query 16329 TAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCT 16388 | | ||||| |||||||||||||| || ||||| ||||| ||||| || || | || | Sbjct 8554909 TGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACAACGCGTT 8554850 Query 16389 CACCGTACGT--TCTAtttttactttctatccattttttagcccaatttgctttttgttt 16446 |||| || || || ||| | | | ||||| ||||||| ||| || | | Sbjct 8554849 CACCATAGGTAGCCTCTTTGTCC--CCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTG 8554792 Query 16447 AACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAAT 16506 ||||| ||| | || || ||||| || | | | | |||| ||| |||| || Sbjct 8554791 GACACAAGGCATCGTTTCAATGGCATTGAAAAGAAATTCCCTTTCGTTGGGATCTTTTAT 8554732 Query 16507 ATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTAT 16560 |||| || || || |||||||||||||| ||||| || || ||||| || || Sbjct 8554731 GCAAGTGTCAATAAGGAAACTATACATTTCAGAATGTATGTTTTCCATGGCAAT 8554678 >seq18140 Length=5205659 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | || || || || ||| | | | || |||||||| | Sbjct 760785 TTTAAAAATCTGCATCCAAAGTGAAGACGTTGTCTGTGGTTTCTGCCATAACTGCAAAAC 760726 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || |||||||||||||||||||||||||| ||||| |||| Sbjct 760725 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTT 760666 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||||||||||| || Sbjct 760665 CCATAAAATCAAAAGGATTTTCTG 760642 >seq27380 Length=10165399 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| || || ||||| ||||||||||| || Sbjct 7666513 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 7666572 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| ||||| ||||| || Sbjct 7666573 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 7666632 Query 16379 ACCAATCGCTCACC 16392 || | || ||||| Sbjct 7666633 ACGACCCGTTCACC 7666646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462344790349200