Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq21427 1480 0.0 seq22996 127 1e-24 seq15030 96.9 2e-15 seq10187 89.7 4e-13 >seq21427 Length=8993756 Score = 1480 bits (1640), Expect = 0.0 Identities = 1347/1695 (79%), Gaps = 55/1695 (3%) Strand=Plus/Minus Query 107098 GCTGGTTTGCAGCATCAGGTTACAGATGTCCATCCACAA-----------GGGTCTT--A 107144 ||| ||||| || ||||||||||||| | |||| |||| ||| ||| | Sbjct 5622040 GCTAGTTTGTAGGGTCAGGTTACAGATCTTCATCAACAAACCAGATGTAAGGGGCTTGTA 5621981 Query 107145 GGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCACTCTGG 107204 |||||| ||| ||| |||||||| || | |||| || || ||| ||||| | ||| Sbjct 5621980 GGCAGGTCTTTACTAAGGATATTGATCCAGGTAAGAAAT--ATGTTTGCCATCCATTTGG 5621923 Query 107205 AGTTGAACTTGATGTT-CTGG-----ATTAGTTTGTAATTAAAGGCATTTTGTTCTGTCC 107258 | |||||||||||||| |||| ||| |||||||| | |||||||||||||||||| Sbjct 5621922 AATTGAACTTGATGTTTCTGGGAGTGATTGGTTTGTAACTGGAGGCATTTTGTTCTGTCC 5621863 Query 107259 AAGGATC---TCCTCCTCCACCTTGCCTGTGCCCAAACTCT-CCTGATCTCCCATCCCAT 107314 ||||||| || |||||| |||| ||||||| || ||| |||| |||||||| | | Sbjct 5621862 AAGGATCCTGTCGTCCTCCTCCTTCCCTGTGCTCAGTCTCCACCTG-TCTCCCATTCTGT 5621804 Query 107315 GAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTG 107374 || |||| | |||||||| || ||| || ||| | ||||||| |||||||| Sbjct 5621803 GATAATGGTTCAATGGAAGAAA---CTCTGCTGGCAGCATTACTTGTGGGCACTGGGCTG 5621747 Query 107375 CTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGA 107434 ||||||||||||||| ||| |||||| |||||| |||||||| || ||||| || Sbjct 5621746 TTATATGCTGCTGGCCATTGCGGCTCTGAAACTTTCTCTCAGGTTAAAGTGTGACTCTGA 5621687 Query 107435 TTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAA 107494 ||||| ||||||| ||||||| || || || ||| |||||||| | || |||||||| Sbjct 5621686 CCACTTGGGTCTGGAGCCCAGGGAATTTCAAAGCCAGTACTGTAGGAATATCTTGTACAA 5621627 Query 107495 TAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCA 107554 | |||||||||||||||||| | || ||| ||||||| ||| |||| ||||||||||| Sbjct 5621626 TTCCCTGAAGCTGCCAGCAAACAAGTCTATCGACTGTTCAGGGGTCACCCGAGGGGACCA 5621567 Query 107555 GGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCT 107614 ||||| ||| | ||||| | || |||||||| || ||||| |||||| |||| | Sbjct 5621566 AGAAGCGGTGTTGCAGGCTATTCTGAGTAACCTGGAGGTCAAGAAGAAGCGGGAGCCTTT 5621507 Query 107615 CACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAA 107674 ||| | |||| | |||||| | |||||||||||||||||||| ||||| ||||||| Sbjct 5621506 CACAGACACCCACTACCTCTCGCTCACCAGAGACTGTGAGCGCTTTAAGGCTGAAAGGAA 5621447 Query 107675 GTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGT 107734 ||||||||||||||||||||| ||||||||| | || ||||| ||||| || || ||||| Sbjct 5621446 GTTCATACAGTTCCCACTGAGCAAAGAAGAGGTGGAGTTCCCTATTGCATATTCCATGGT 5621387 Query 107735 GGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAA 107794 | | |||||||||||||||||||||||| |||| |||||||| || |||||||||||||| Sbjct 5621386 GATTCATGAGAAGATTGAAAACTTTGAAAGGCTCCTGCGAGCAGTATATGCCCCTCAGAA 5621327 Query 107795 CATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGC 107854 ||||||||| |||||||||||| |||||||||||| ||||||||| |||| ||||| || Sbjct 5621326 CATATACTGCATCCACGTGGATGAGAAGTCCCCAGAAACTTTCAAAAAGGCAGTCAAAGC 5621267 Query 107855 CATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGC 107914 |||| || |||||||| || |||||||| ||||||||| |||| | ||||||||||| Sbjct 5621266 AATTACCTCATGCTTCCCAAACGTCTTCATAGCCAGTAAGCTGGTTCGAGTGGTTTATGC 5621207 Query 107915 CTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGT 107974 |||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||| Sbjct 5621206 CTCCTGGTCCAGGGTGCAAGCTGACCTCAACTGCATAGAAGACTTGCTCCAGAGCTCAGT 5621147 Query 107975 GCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGA 108034 ||||||||| ||||| ||||||||||||||||| ||||| || ||||||| |||||| || Sbjct 5621146 GCCATGGAAATACTTCCTGAATACATGCGGGACGGACTTTCCTATAAAGAGCAATGCAGA 5621087 Query 108035 GATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTC 108094 |||||||| ||| |||||||||||||| || | ||| ||||||||||| ||||||||| | Sbjct 5621086 GATGGTCCAGGCTCTCAAGATGTTGAATGGGAGGAATAGTATGGAGTCAGAGGTACCTAC 5621027 Query 108095 TGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAG---GTGACAGACACACTGTACCC 108151 | |||||||| |||| ||||||||||||| || |||| |||| |||| | | |||| Sbjct 5621026 TAAGTCCAAAGAAAACCGCTGGAAATACCACTTTGAGGTAGTGAGAGACCAATTACACCC 5620967 Query 108152 TACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTA 108211 ||||| || |||||| ||||||||| |||| || | ||||||||||||||||| || Sbjct 5620966 AACCAGAAA---GAAGGATCCTCCCCCTTTTAATGTAACTATGTTCACAGGGAATGCATA 5620910 Query 108212 TTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACT 108271 | ||||||| || |||| |||||||||||||| || | || |||||||||||| ||| Sbjct 5620909 TATTGTGGCTTCCCGAGATTTTGTCCAACATGTTTTGAAGAATCCTAAATCCCAACAACT 5620850 Query 108272 GGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG 108331 | |||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||| Sbjct 5620849 GATTGAATGGGTAAAAGACACCTACAGCCCTGATGAACACCTCTGGGCCACCCTTCAGCG 5620790 Query 108332 TGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGAC 108391 ||| |||||||||||||||||||||| |||| ||||||| ||||||||||||||| Sbjct 5620789 TGCATGGTGGATGCCTGGCTCTGTTCCTCATCACCGCAAGTATGACATCTCAGACATGAT 5620730 Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCC 108451 | | || |||||||| |||||||||||| | || |||||||| ||||| ||| || || Sbjct 5620729 TTCTATTGCCAGGCTGGTCAAGTGGCAGAATCATGAGGGAGACGTCAGTCAGGGTGCCCC 5620670 Query 108452 TTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCT 108511 ||| | || ||||||||||| || | | |||| |||| | || ||||| |||||| | Sbjct 5620669 TTACGGCCCTTGCTCTGGAATTCACCAGCGGGCTGTCTGTGTGTATGGGGCTGGGGACTT 5620610 Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGA 108571 | | ||||| || || ||||||||||| ||||| |||||||||||||| | ||| ||||| Sbjct 5620609 GCATTGGATGCTTCAAAACCATCACCTGTTGGCCAACAAGTTTGACCCAAAGGTAGATGA 5620550 Query 108572 TAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACT 108631 || || || |||||||| ||||||||||||||| |||||||| |||||||||||| ||| Sbjct 5620549 TAGTGTTCTTCAGTGCTTGGAAGAGTACCTACGTTATAAGGCCTTCTATGGGACTGCACT 5620490 Query 108632 TTGAGCTGCACTGT-------------------GGGCCAGGGACTGTGCCAACATGCCCA 108672 ||||| ||||| | |||| || | |||| | ||||| || Sbjct 5620489 TTGAGACGCACTCTGAGAGCATTGCTACCTGCGGGGCAAGAGCATGTGTAAGCATGCTCA 5620430 Query 108673 GGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCATGGCATCCCCCA 108732 | | | || | || |||| |||||| ||| |||||| || |||| |||||||||| | Sbjct 5620429 GAACTTGCTAGGACAGTGT-GGGTGGCAGACCAGGGCTTTGCAATCTGTGGCATCCCCTA 5620371 Query 108733 GGGTCAGAGGGCTGC 108747 || || ||||||| Sbjct 5620370 GGAGAAGGGGGCTGC 5620356 >seq22996 Length=989293 Score = 127 bits (140), Expect = 1e-24 Identities = 565/882 (64%), Gaps = 21/882 (2%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| ||| || || || || || || || ||||| || | ||| Sbjct 691899 CCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCATATTCTATAGTGGTTCACCACAAG 691840 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || |||| |||| |||| ||| | ||| | ||| |||||||| | || || | Sbjct 691839 ATCGAAATGCTTGACAGGCTACTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATT 691780 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || ||||| || ||| || | | || || || | || |||| |||||| Sbjct 691779 CATGTGGACAAAAAATCCAAGGATTCCTATTTAGCTGCAGTGATGGGCATTGCTTCCTGT 691720 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| |||||||| ||||||| |||| ||||||||||| || ||| | | Sbjct 691719 TTCAGTAATGTCTTTGTGGCCAGCCGATTGGAGAGTGTGGTTTATGCATCGTGGAGCCGG 691660 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || |||||||| ||||| ||| | ||| | || | | || || | ||||||| Sbjct 691659 GTTCAGGCTGACCTCAACTGCATGAAGGACCT-CTACGCAATGAAG-GCAAACTGGAAGT 691602 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 |||| | ||| || || | || || || || || ||||| || || ||| | Sbjct 691601 ACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTAGAAATTGTCAGGA 691542 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGG---TACCTTCTGAGTCCa 108102 |||||| |||||| ||| | |||| |||| | ||| | || || | | Sbjct 691541 AGCTCAAGTTGTTGATGGGAGAAAACAACCTGGAAACGGAGAGGATGCCATCCAAT---A 691485 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGA 108162 || || | | |||||| | || |||||||| | | | || | | || || Sbjct 691484 AAGAAGAAAGGTGGAAAAAGCGGTATGAGGTCATTAATGGAAAGTTGACAAACACAGGGA 691425 Query 108163 ---TGAAGGACCCTCCCCC--TGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGT 108217 | || | | ||| || || || |||| | || | || | |||||| ||||| Sbjct 691424 CTGTCAAAGTGCTTCCTCCGCTGGAAAC--ACCCCTTTTTTCTGGCAGTGCCTACTTTGT 691367 Query 108218 GGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGA 108277 || | | | | | ||| |||| || | || ||| ||||| | | || Sbjct 691366 GGTCAGTAGGGAGTATGTGGCGTATGTACTACAGAATGAAAAAATCCAAAAGTTTATGGA 691307 Query 108278 ATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCC 108337 |||| ||||||| |||||||| || || | |||||||| ||| | ||| | ||| Sbjct 691306 GTGGGCACAAGACACATATAGCCCTGATGAGTATCTCTGGGCTACCATCCAGAGGATTCC 691247 Query 108338 GTGGA-TGCCTGGCTCTGTTCCTAGCCACCCC-AAGTATCACATCTCAGACATGACTGCC 108395 || | | || ||||| | || |||| || ||||| | | || |||||| || Sbjct 691246 -TGAAGTCCCGGGCTCACTCTCT-GCCAGCCATAAGTACGATTTGTCTGACATGCACGCG 691189 Query 108396 ATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTAT 108455 || |||||| | ||||||||||||||| ||||| ||||| || ||| || || || Sbjct 691188 ATTGCCAGGTTTGTCAAGTGGCAGTACTTTGAGGGTGATGTTTCCAAGGGTGCTCCCTAC 691129 Query 108456 GCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTAC 108515 |||||||| || | || | | | | ||||||| ||| || || ||| || || Sbjct 691128 CCACCCTGCGACGGGGTGCACGTGCGCTCGGTGTGCATTTTCGGAGCTGGCGACTTGAAC 691069 Query 108516 TGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||||| || | || || ||| | || || || ||||||||| Sbjct 691068 TGGATGCTGCGCAAGCACCACTTGTTTGCCAATAAGTTTGAC 691027 >seq15030 Length=8820624 Score = 96.9 bits (106), Expect = 2e-15 Identities = 227/337 (67%), Gaps = 12/337 (4%) Strand=Plus/Plus Query 107698 AAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACT 107757 |||||||| | | ||||| | ||||| ||||| ||||| || | |||| | || Sbjct 7372140 AAGAAGAGGTTGCATTCCCTTTGGCCTATGTCATGGTCATCCATAAGGACTTTGATACCT 7372199 Query 107758 TTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATG 107817 ||||| |||| | | || | ||| || |||||| | |||||||| |||||||||| Sbjct 7372200 TTGAAAGGCTCTTTAGGGCTATCTATATGCCCCAGAACGTCTACTGTGTTCACGTGGATG 7372259 Query 107818 TGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCT-GCTTCCCCAAT 107876 ||| |||||| ||||| || | || | ||| ||| | | |||||| ||| Sbjct 7372260 AGAAAGCCCCAGCTGAGTTCAAGGAATCTGTGA-GGCAGTTACTGAGTTGCTTCCAAAAT 7372318 Query 107877 GTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCT 107936 | ||||| || ||| | | ||||||||||| ||||| | || ||| Sbjct 7372319 GCTTTCATTGCTTCAAAGACAGAGTCTGTGGTTTATGCAGGAATTTCCAGGCTCCAGGCT 7372378 Query 107937 GACCTGAACTGTATGGAAGA-CTTG----CTCCAGAGCTCAGTGCCATGGAAGTACTTAC 107991 |||||||||||| || |||| |||| |||| ||| || || ||||||||| | Sbjct 7372379 GACCTGAACTGTCTGAAAGATCTTGTCACCTCC-GAG----GTTCCCTGGAAGTACGTCA 7372433 Query 107992 TGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 | || || || || |||||||||| | || ||||| Sbjct 7372434 TCAACACCTGTGGACAAGACTTCCCCCTGAAAACCAA 7372470 >seq10187 Length=3503860 Score = 89.7 bits (98), Expect = 4e-13 Identities = 180/266 (68%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 107695 GTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAA 107754 ||||||||||| ||| || || || || || || | ||||| ||| | ||||| |||| Sbjct 1773034 GTAAAGAAGAGGCAGAGTTTCCAATAGCATATTCTACAGTGGTTCATCACAAGATCGAAA 1773093 Query 107755 ACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGG 107814 |||| |||| ||| | ||| | ||| |||||||| | || || | || |||| Sbjct 1773094 TGCTTGACAGGCTACTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATTCATGTGG 1773153 Query 107815 ATGTGAAGTCCCCAGAGACTTTCAA---AGAGGCGGTCAAGGCCATTATTTCCTGCTTCC 107871 | || ||| ||| || | | || || || | || |||| |||||| ||| Sbjct 1773154 ACAAAAAATCC---GAGGATTCCTATTTAGCTGCAGTGATGGGCATTGCTTCCTGTTTCA 1773210 Query 107872 CCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGC 107931 |||||||| ||||||| |||| ||||||||||| || ||| | | || | Sbjct 1773211 GTAATGTCTTTGTGGCCAGCCGATTGGAGAGTGTGGTTTATGCATCGTGGAGCCGGGTTC 1773270 Query 107932 AAGCTGACCTGAACTGTATGGAAGAC 107957 | |||||||| ||||| ||| | ||| Sbjct 1773271 AGGCTGACCTCAACTGCATGAAGGAC 1773296 Score = 87.8 bits (96), Expect = 1e-12 Identities = 187/274 (68%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 108286 AAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGA-TG 108344 ||||||| |||||||| || || | |||||||| || | ||| | ||| || | | Sbjct 1773627 AAGACACATATAGCCCTGATGAGTATCTCTGGGCTGCCATCCAGAGGATTCC-TGAAGTC 1773685 Query 108345 CCTGGCTCTGTTCCTAGCCACCCC-AAGTATCACATCTCAGACATGACTGCCATCGCCAG 108403 || ||||| | || |||| || ||||| | | || |||||| || | ||||| Sbjct 1773686 CCGGGCTCACTCTCT-GCCAGCCATAAGTACGATTTATCTGACATGCACGCTGTTGCCAG 1773744 Query 108404 GCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTG 108463 | | ||||||||||||||| ||||| |||||| || || || || || ||||||| Sbjct 1773745 GTTTGTCAAGTGGCAGTACTTGGAGGGTGATGTCTCCAAGGATGCTCCCTACCCACCCTG 1773804 Query 108464 CTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCT 108523 | || | || | | | | ||||||| ||| || || ||| || ||||||| || Sbjct 1773805 CGACGGGGTGCACGTGCGCTCGGTGTGCATTTTCGGAGCTGGCGACTTGAACTGGATGCT 1773864 Query 108524 CCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | || || ||| || || || ||||||||| Sbjct 1773865 GCGCAAGCACCACTCGTTTGCCAATAAGTTTGAC 1773898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348146039819028