Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq12486 289 2e-73 seq19633 141 7e-29 >seq12486 Length=6174982 Score = 289 bits (320), Expect = 2e-73 Identities = 545/798 (68%), Gaps = 4/798 (1%) Strand=Plus/Minus Query 19978 GATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGAGA 20037 || || ||||| || || || | || || || | | ||| | || || | | |||| Sbjct 2654976 GACCGCACCGGCACCGGGACCCTGTCGGTGTTCTGCAGGCAGGCGCGCTACAGCCCGAGA 2654917 Query 20038 AATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTA 20097 |||||||||| | |||| || ||| | || ||||| || ||| | || ||||| Sbjct 2654916 GATGAATTTCCTCTGCTAACAACCGAACATCTGTTCTGGAAGGGTGTTTTGGAGGAGTTG 2654857 Query 20098 TTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATT 20157 || |||||||| || ||||| |||||| || ||||| || ||||| || || Sbjct 2654856 TTGTGGTTTATCAAGGGATCCACAAATGCTGAAGAGCTGCCTTCCAAGGGAGTGAAAATC 2654797 Query 20158 TGGAGCGCACATGGAT-CTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGA 20216 ||| || |||||| | ||| | ||| | | ||| ||||| | | | |||| Sbjct 2654796 TGGGATGCCAATGGATACCAAG-ACTTTCTGGATAGCTTGGGATTCTCCGCCAGAGAAGA 2654738 Query 20217 GGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGA 20276 ||||| ||||| || || ||||| || |||||||| |||||||| || ||||| || Sbjct 2654737 AGGGGACTTGGGCCCAGTTTATGGCTTCCAATGGAGGCATTTTGGGGCAGAATAGA--GA 2654680 Query 20277 CATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAAT 20336 ||| | || |||||| ||| ||||||| || ||| | |||| || ||| | || Sbjct 2654679 TATGGATTCAGATTATTCAGGAAAAGGAGTTGACCAACTGCAAAGAGTGATTGACACCAT 2654620 Query 20337 TAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCC 20396 ||||| ||||| | ||||||||||| || ||| | ||||| | | |||| | || Sbjct 2654619 CAAAACCAACCCTGATGACAGAAGAATCATCACGTGCACTTGGAATCCAAGAGATCTTCC 2654560 Query 20397 TTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATT 20456 | | ||||| |||||||||| ||| || ||||| || || || | ||| ||| | Sbjct 2654559 TCTGATGGCGCTGCCTCCATGCCATGCCCTCTGCCAGTTCTAAGTGGTGAATGGTGAGCT 2654500 Query 20457 GTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGC 20516 ||| || || |||| || ||||| | || || || || ||||| |||||||| || || Sbjct 2654499 GTCCTGCCAGCTGTACCAGCGATCGGGAGACATCGGCCTAGGTGTGCCTTTCAACATCGC 2654440 Query 20517 AAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTT 20576 || || || ||||| | ||| ||||| || || | || | | || |||||||||| Sbjct 2654439 CAGCTAGGCCCTGCTCATGTACATGATCGCGCACATCACGGGCCTGAAGCCGGGTGACTT 2654380 Query 20577 AGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACA 20636 || || || | ||||| || ||||||||||| ||||| || || || | ||| | || Sbjct 2654379 TGTACATACTTTGGGAGATGCACATATTTACCTGAATCACATCGAGCCACTGAAAATTCA 2654320 Query 20637 GTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGATAT 20696 | | ||| |||| | || ||||||| || ||| ||||| ||| | | || Sbjct 2654319 GCTTCAGCGAGAACCCAGACCTTTCCCAAAACTCAAGATTCTTCGAAAAGTTGAGAAAAT 2654260 Query 20697 TAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCAATTCC 20756 | | || || ||| |||| || ||| | | ||||| || ||||| ||| | ||| Sbjct 2654259 TGATGACTTCAAAACTGAAGACTTTAAGGTTGAAGGGTACAATCCACATCCAGCTATTAA 2654200 Query 20757 AATGGAAATGTCTGTTTA 20774 |||||||||| ||||||| Sbjct 2654199 AATGGAAATGGCTGTTTA 2654182 Score = 167 bits (184), Expect = 2e-36 Identities = 335/497 (67%), Gaps = 0/497 (0%) Strand=Plus/Minus Query 19978 GATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGAGA 20037 || || ||||| || || || | || || || | | ||| | || || | | |||| Sbjct 332485 GACCGCACCGGCACCGGGACCCTGTCGGTGTTCTGCAGGCAGGCGCGCTACAGCCCGAGA 332426 Query 20038 AATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTA 20097 |||||||||| | | || || ||| | || ||||| || ||| | || ||||| Sbjct 332425 GATGAATTTCCTCTGCTGACAACCGAACATCTGTTCTGGAAGGGTGTTTTGGAGGAGTTG 332366 Query 20098 TTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATT 20157 | |||||||| || ||||| |||||| ||| ||||| || ||||| || || Sbjct 332365 CTGTGGTTTATCAAGGGATCCACAAATGCTAAAGAGCTGTCTTCCAAGGGAGTGAAAATC 332306 Query 20158 TGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAG 20217 ||| || ||||||| | ||| | | ||| ||||| | | | |||| Sbjct 332305 TGGGATGCCAATGGATCCCGAGACTTTCTGGATAGCTTGGGATTCTCCGCCAGAGAAGAA 332246 Query 20218 GGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC 20277 ||||| ||||| || || ||||| || || ||||| |||||||| || ||||| || Sbjct 332245 GGGGACTTGGGCCCAGTTTATGGCTTCCAGTGGAGGCATTTTGGGGCAGAATACAGAGAT 332186 Query 20278 ATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATT 20337 ||| | || |||||| ||||||||||| || ||| | |||| || ||| | || Sbjct 332185 ATGGATTCAGATTATTCAGGACAAGGAGTTGACCAACTGCAAAGAGTGATTGACACCATC 332126 Query 20338 AAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCT 20397 ||||| ||||| | ||||||||||| || | ||||| ||||| | | |||| | ||| Sbjct 332125 AAAACCAACCCTGATGACAGAAGAATCATCATGTGCGCTTGGAATCCAAGAGATCTTCCT 332066 Query 20398 TTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTG 20457 | ||||| |||||||||| ||| || ||||| || || || | || ||| || Sbjct 332065 CTGATGGCGCTGCCTCCATGCCATGCCCTCTGCCAGTTCTAAGTGGTGAACGGTGAGCTG 332006 Query 20458 TCGTGTCAAATGTATCA 20474 || || || |||| || Sbjct 332005 TCCTGCCAGCTGTACCA 331989 >seq19633 Length=3468624 Score = 141 bits (156), Expect = 7e-29 Identities = 278/406 (68%), Gaps = 9/406 (2%) Strand=Plus/Plus Query 19978 GATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGAGA 20037 || || ||||| || || || | || || || | | ||| | || || | | ||||| Sbjct 1959618 GACCGCACCGGCACGGGGACCCTGTCGGTGTTCTGCAGGCAGGCGCGCTACAGCCTGAGA 1959677 Query 20038 AATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTA 20097 |||||||||| | | || || ||| | | || ||||| || ||| | || || || Sbjct 1959678 GATGAATTTCCTCTGCTGACAACCAAATGTCTGTTCTGGAAGGGTGTTTTGGAGGAATTG 1959737 Query 20098 TTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATT 20157 | |||||||| || ||||| |||||| ||| ||||| | || ||||| || || Sbjct 1959738 CTGTGGTTTATCAAGGGATCCACAAATGCTAAAGAGCTGTCATCCAAGGGAGTGAAAATC 1959797 Query 20158 TGGAGCGCACATGGATC-TAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCA-AG 20215 ||| || ||||||| | || | ||| | | ||| ||||| ||| || || Sbjct 1959798 TGGGATGCCAATGGATCCTGAG-ACTTTCTGGATAGCTTGGGATTCT----CCGCCAGAG 1959852 Query 20216 AGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTG 20275 | ||||| ||||| || || ||||| || || ||||| |||||||| || ||||| | Sbjct 1959853 AAGGGGACTTGGGCCCAGTTTATGGCTTCCAGTGGAGGCATTTTGGGGCAGAATACA--G 1959910 Query 20276 ACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAA 20335 | ||| | || |||||| ||||||||||| || ||| | |||| || ||| | | Sbjct 1959911 AGATGGATTCAGATTATTCAGGACAAGGAGTTGACCAACTGCAAAGAGTGATTGACACCA 1959970 Query 20336 TTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAA 20381 | ||||| ||||| | ||||||||||| || | ||| | ||||| Sbjct 1959971 TCAAAACCAACCCTGATGACAGAAGAATCATCATGTGCACTTGGAA 1960016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399043292879290