Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq12132 315 7e-81 seq23499 284 1e-71 seq22719 269 3e-67 seq27380 114 1e-20 seq24714 104 2e-17 >seq12132 Length=2475592 Score = 315 bits (348), Expect = 7e-81 Identities = 559/808 (69%), Gaps = 8/808 (1%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 57349 TAGAAGTCAGCATCCAAAGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 57291 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | ||||| || |||||||||||||| | ||||||||||| ||||| || Sbjct 57290 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTATCCTTCCAGTGAAATATTCTC 57231 Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034 |||||| ||||||||||| | | || || || | |||| ||||| | | | Sbjct 57230 CATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATAAG 57171 Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094 ||| | || | |||||||| ||||| ||||| | || ||||| || || || || Sbjct 57170 TCTGCCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAGTTCATCCCAATGAGCTT 57111 Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 14154 ||||| | | || | || || | |||||| ||||| | | | || || | Sbjct 57110 CACAGGCAAAGCCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCATTGATAATTATT-T 57052 Query 14155 CGTA-ATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 14213 || | | | || | || || | | ||| ||||| || || | || ||||||| Sbjct 57051 CGCATACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATCAGGCAAGCAAAAT 56992 Query 14214 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 14273 |||| || | ||||||||||| ||||||||||| || |||||||| | || ||||||| Sbjct 56991 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCA 56932 Query 14274 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 14333 ||||||||| || | ||| ||||| | || || || || |||||||| || || || | Sbjct 56931 GTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCA 56872 Query 14334 CTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTC 14393 |||||||||| |||| ||||| ||| | | || | ||||| | ||||| Sbjct 56871 CTGCAGCAAAGGCTACGCG-CGTTCACCATAGGTAGCCTGTTTGTCCCCAATCCAGCGCA 56813 Query 14394 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTT 14453 ||||| || || || || | | || ||| |||||||| ||||| || | | || Sbjct 56812 AGGCCCAATCTGACTTCTTG---ACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATT 56756 Query 14454 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14513 || | || || | | | ||||| || |||||||| | |||||||||||||| |||| Sbjct 56755 CCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 56696 Query 14514 TGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTG 14573 |||||||||| || || || |||||||| ||||| | ||||||| || || ||| Sbjct 56695 TGTTTTCCATGGCAATTTGGAAACCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTT 56636 Query 14574 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14633 || ||||| || |||| |||||||| ||||| ||||||| |||||||| || |||| Sbjct 56635 GGTTAAATCGCTCCACCAAGTTTTCATTTACTATGTCATCACTTGCTGCAAATAAAGCCA 56576 Query 14634 ATATGTTTTTAATAAAGTATTGCTCTTC 14661 | || ||||||||| ||| || Sbjct 56575 GAACGTGGGATATAAAGTATCTCTCCTC 56548 >seq23499 Length=2348749 Score = 284 bits (314), Expect = 1e-71 Identities = 532/779 (68%), Gaps = 2/779 (0%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTG-TTAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | || || || || ||||| | Sbjct 2215563 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGATTTGACATCACTCCCATCCT 2215621 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| |||| ||||| | |||||||||||||| || ||||||||||| ||||| || Sbjct 2215622 CTGATACTCACCTACTCTCGTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 2215681 Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034 |||||| ||||||||||| | | || || || | |||| ||||| | | | Sbjct 2215682 CATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATAAG 2215741 Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094 ||| || || | ||| |||| | ||| ||||| | || ||||| || | || || Sbjct 2215742 TCTGTCTGCCACAAACCCAATGTGTTGCTTCATTAGAGTGCAGTTCATCCCAGTGAGCTT 2215801 Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 14154 ||||| | | || | || || | |||| ||||| | | | || || Sbjct 2215802 CACAGGCAAGGCCTCAGTGAGGAACTCCTGCTCTAACCGAACAGCATTGATAATTATTTC 2215861 Query 14155 CGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 14214 | | | || | || || | | | | ||||| || || | || |||||||| Sbjct 2215862 TCTTACCCTCTCCTCTGATGGTTTGTGTACTGGGTGTTTGAACATCAGGCAAGCAAAATC 2215921 Query 14215 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 14274 ||| || | ||||||||||| ||||||||||| || |||||||| | || ||||||| Sbjct 2215922 ACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAG 2215981 Query 14275 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 14334 ||||||||| || | ||| ||||| | || || || || |||||||| || || || || Sbjct 2215982 TCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAAATGCCTTCCAC 2216041 Query 14335 TGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCT 14394 ||||||||| |||| | ||||| ||| | | | | ||||| | |||| | Sbjct 2216042 TGCAGCAAAGGCTACGACACGTTCACCATAGGTAACCTCTTTGTCCCCAGTCCAGTGCAA 2216101 Query 14395 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTC 14454 ||||| || | || || || | | || ||| ||||||| ||||| || | | ||| Sbjct 2216102 GGCCCAGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAACGGCATTGAAGAGAAATTC 2216161 Query 14455 CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 14514 | | || | | | | ||||| || |||||||| | |||||||||||||| ||||| Sbjct 2216162 CCTTTCGCTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTAT 2216221 Query 14515 GTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGA 14574 ||||||| | || || || || ||||| ||||| | ||||||| || |||||| Sbjct 2216222 GTTTTCCCTGGCAATTTGGAATCCATAGAAACAGCGGGCTTCTGTAATCTGAACCTCTTG 2216281 Query 14575 GTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14633 | ||||| || |||| |||||||| ||||| || | ||| |||||||| || |||| Sbjct 2216282 GCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCCTTACTCGCTGCAAAGAAAGCCA 2216340 >seq22719 Length=8987742 Score = 269 bits (298), Expect = 3e-67 Identities = 529/780 (68%), Gaps = 24/780 (3%) Strand=Plus/Minus Query 13859 AAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTTTTG 13917 || ||| |||| || | |||| ||| || | || | | || || || ||||| | || Sbjct 8555348 AAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCTCTG 8555290 Query 13918 ATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13977 ||| || | ||||| || |||||||||||||| || ||||||||||| ||||| ||||| Sbjct 8555289 ATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTCCAT 8555230 Query 13978 AAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCT 14037 ||| |||||||||| | | || || || | |||| ||||| | | | ||| Sbjct 8555229 AAAGGCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATAAGTCT 8555170 Query 14038 ATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 14097 || || | |||||||| ||||| ||||| | |||||||| || || || || || Sbjct 8555169 GTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCAC 8555110 Query 14098 AGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT--- 14154 ||| | | || | || || | |||||| ||||| | | ||||| || Sbjct 8555109 AGGCAAGGCCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCAT---TCATAATTATTTC 8555053 Query 14155 -CGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 14213 | || | | || | || || | | || ||||| || || | || ||||||| Sbjct 8555052 TCTTACTC-TCTCCTCTGATGGTTTGTGTACTATGTGTTTGAACATCAGGCAAGCAAAAT 8554994 Query 14214 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 14273 |||| || | ||||||||||| ||||||||||| || |||||||| | || ||||||| Sbjct 8554993 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCA 8554934 Query 14274 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 14333 ||||||||| || | ||| ||||| | || || || || |||||||| || || || | Sbjct 8554933 GTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCA 8554874 Query 14334 CTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTC 14393 |||||||||| |||| | ||||| ||| | | || | ||||| | ||||| Sbjct 8554873 CTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCA 8554814 Query 14394 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTT 14453 ||||| || | || || | | | || ||| |||||||| ||||| || | | || Sbjct 8554813 AGGCCCAATCTGCCTTCTTCTGGACACAAGGCATCGTTTCAATGGCATTGAAAAGAAATT 8554754 Query 14454 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14513 || | || || | | | ||| | || |||||||| || |||||||||||||| |||| Sbjct 8554753 CCCTTTCGTTGGGATCTTTTATGCAAGTGTCAATAAGGAAACTATACATTTCAGAATGTA 8554694 Query 14514 TGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTG 14573 |||||||||| || || |||| | | ||||| || || ||| Sbjct 8554693 TGTTTTCCATGGC--------------AATAACAGCGGGTTTCTGTAATCTGAACTTCTT 8554648 Query 14574 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14633 | |||| || |||| |||||||| ||||| ||||||| |||||||| || |||| Sbjct 8554647 GGCTAAATTGCTCCACCAAGTTTTCATTTACTATGTCATCACTTGCTGCAAAGAAAGCCA 8554588 >seq27380 Length=10165399 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 7666511 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 7666570 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || || |||||||| || || || ||||||||||| | Sbjct 7666571 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 7666630 Query 14346 CTATTAATCGTTCTCC 14361 ||| | ||||| || Sbjct 7666631 CTACGACCCGTTCACC 7666646 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 7664671 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 7664729 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 7664730 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 7664789 Query 13975 CATAAAATCAAATGGATT 13992 |||||| ||||||||||| Sbjct 7664790 CATAAAGTCAAATGGATT 7664807 Score = 86.0 bits (94), Expect = 6e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 ||||| || |||||||| | |||||||||||||| |||||||||||||| || || || Sbjct 7668628 ATGTAAGTGTCAATAAGCAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 7668687 Query 14534 AAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| | ||||||| Sbjct 7668688 AAGCCATAGAAACAGCGGGCTTCTG 7668712 >seq24714 Length=5211462 Score = 104 bits (114), Expect = 2e-17 Identities = 269/405 (66%), Gaps = 10/405 (2%) Strand=Plus/Plus Query 14225 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 14284 |||||||| || ||||||||||| || |||||||| | || | ||||| || | |||| Sbjct 5055819 CCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGACATCAGTCATTGTTTC 5055878 Query 14285 tttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 14344 || | || ||||| | ||||| || || ||| |||| | || || | || ||||| Sbjct 5055879 TTGAGGCAGAATATCGATGCGAAAGAACCAGAAGAGAAGGTGCCTTCTA-TG--GCAAAG 5055935 Query 14345 GCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCA 14404 ||| | |||||||| | || | ||||||| ||||| ||||| || Sbjct 5055936 GCTGCAACAAGTTCTCCATGGGTAGCATCTTTGTTCACAATCCAACACAAGGCCCAATCT 5055995 Query 14405 GAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTA 14464 | | | | | | || ||| ||||||| ||||| || | | |||| | ||||| Sbjct 5055996 GCCTCCTCCCTGACACAAGGCATCCTTTCAATGGCATTGAAGAGAAATTCCATTTCTTTG 5056055 Query 14465 GT-ACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCAT 14523 | ||| || |||| ||||||| | ||| ||| ||||| | ||||||||||| Sbjct 5056056 TTGTCTTTAA---CATGTGTCAATAAAGAGATTATCCATGTCAGAATAGATGTTTTCCAT 5056112 Query 14524 AGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCT 14583 ||| || || || ||||| || || | ||||| || || ||| | |||| Sbjct 5056113 AGCAATTTGGAAGCCATAGAAGCA---GGTTTCTGTAGCCTGAACTTCTTGGACAAATTG 5056169 Query 14584 TTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14628 || |||| |||| || |||| | ||||| | |||||||| || Sbjct 5056170 CTCCACCAAGTTTTTATCAACTGTGCCATCGCATGCTGCAAAGAA 5056214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482171220006960