Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq27641 96.9 3e-15 seq24834 87.8 1e-12 seq23666 84.2 2e-11 seq20631 82.4 6e-11 seq20084 82.4 6e-11 seq2233 82.4 6e-11 >seq27641 Length=16599674 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135 || || | ||| |||| ||| | | || || ||||| || || | ||||| || || | Sbjct 1039283 AAGACTTCTTCCTTTTCTTAGCACCACCACGAAGTCTCAGCACAAGATGAAGAGTAGACT 1039224 Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195 | ||||||||||||||||| | || || | | ||||||| ||| ||||| ||| ||| Sbjct 1039223 CCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCGTCTTCCAGTTGCTTGCCAGCAAAGA 1039164 Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 | |||||||| ||||| || | |||||||||||| Sbjct 1039163 TCAGTCTTTGCTGATCAGGAGGAATGCCTTCCTTATC 1039127 >seq24834 Length=2526834 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || || || ||||||||||||||||| | || || | |||||||| ||| Sbjct 598482 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAGTTGC 598541 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| |||||||| ||||| || | ||||||||||| || | Sbjct 598542 TTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 598601 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | | | || || ||| || |||| ||||||| | || || || Sbjct 598602 GCCTTTACATTTTCTGTCGTATCCGAGGGTTCAACCTCAAGGGTGATGGTCTTCCCCGTA 598661 Query 18303 AATGTTTTTACAAAAATTTGCATTTT 18328 | ||||| || ||||| |||||||| Sbjct 598662 AGGGTTTTCACGAAAATCTGCATTTT 598687 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || || || ||||||||||||||||| | || || | |||||||| ||| Sbjct 2359052 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAGTTGC 2358993 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230 ||||| ||| |||| |||||||||||||| || | ||||||||| Sbjct 2358992 TTGCCAGCAAAGATCAGTCTTTGTTGATCAGGAGGAATTCCTTCCTTA 2358945 >seq23666 Length=5806929 Score = 84.2 bits (92), Expect = 2e-11 Identities = 166/245 (68%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| | || | ||||| || || || || ||| Sbjct 828659 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGA 828718 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | |||||||| ||| ||||| ||| |||| |||||| Sbjct 828719 ATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTT 828778 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263 || ||||| || | ||||||||||| || | ||| || | | | | | Sbjct 828779 TGGTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATA 828838 Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 || ||| || || | ||||||| | || || || | ||||| || ||||| ||| Sbjct 828839 TCCGAGGGTTCAACTTTGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGC 828898 Query 18324 ATTTT 18328 ||||| Sbjct 828899 ATTTT 828903 >seq20631 Length=3741062 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 18105 CGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTT 18164 || ||||| | |||| ||||| || || || ||||||||||||||||| | | || Sbjct 1078082 CGAAGTCTCAACACCAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGAGTA 1078023 Query 18165 TTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCT 18224 | |||||| | ||| ||||| |||||||| |||||||| ||||| || | ||| Sbjct 1078022 CGTCCATCTTCTAGTTGCTTGCCAGCATAGATCAGTCTTTGCTGATCAGGAGGAATTCCT 1077963 Query 18225 TCCTTATC 18232 |||||||| Sbjct 1077962 TCCTTATC 1077955 >seq20084 Length=6261642 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || || || ||||||||||||||||| | || || || |||||||| ||| Sbjct 3809768 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAACCATCTTCCAGTTGC 3809827 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| ||| ||| |||||||| ||||| || | ||||||||||| Sbjct 3809828 TTGCCAGCAATGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 3809877 >seq2233 Length=2295209 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | | || | |||| Sbjct 1388448 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 1388389 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | |||||||||||| Sbjct 1388388 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCCTTATCC 1388329 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | | | ||||||| ||||| || | ||| | | | Sbjct 1388328 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTCCACCTCCAGGGTTACGGTC 1388269 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||||||||| || || || || || |||||||| Sbjct 1388268 TTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 1388234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379210286218890