Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq17644 116 3e-21 seq27641 98.7 9e-16 seq26070 96.9 3e-15 seq2233 96.9 3e-15 seq23666 91.5 1e-13 seq19202 91.5 1e-13 seq24834 89.7 5e-13 seq18140 87.8 2e-12 seq17446 87.8 2e-12 seq16297 87.8 2e-12 seq13033 87.8 2e-12 seq9653 86.0 6e-12 seq20084 82.4 7e-11 seq9996 82.4 7e-11 >seq17644 Length=22291198 Score = 116 bits (128), Expect = 3e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| ||||||||||| ||||| || || || ||||| || || || || Sbjct 3012409 ACCTCATCTTTGCTGGTGTACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 3012350 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || ||||| || ||||| || |||||||| ||||| || Sbjct 3012349 CCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTATAGAGCATATACGGGGTA 3012290 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||||||||| || Sbjct 3012289 CCTGTCTCTGTCTGAGACTCGATGATGGC 3012261 >seq27641 Length=16599674 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/221 (70%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||||| || || | ||||| || || |||||| || | |||||||| Sbjct 1039032 AAAATGCAGCTTTTCGTGAAAACCCGTACAGGGAAGACCATCACCCTCAAGGTTGAACCC 1039091 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| | | | ||| | ||| ||||||||| | || || || Sbjct 1039092 TCGGATACGATAGAAAATGAAAGGCCAAGA-TCCAGGATAAGGAAGGCATTCCTCCTGAT 1039150 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||| | || || || |||||||| || |||||||| ||| || || || Sbjct 1039151 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGACGGACATACTTTGTCTGACTAC 1039210 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || || ||||| Sbjct 1039211 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGCTGAGACT 1039251 >seq26070 Length=4351986 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| || || || ||||| || || |||||| |||| |||||||| Sbjct 512596 AAAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCC 512655 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 | || | | |||| || || | || ||| |||||||| | || || || Sbjct 512656 TTGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 512715 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||| | || || || |||||||| || |||||||| ||| || || || Sbjct 512716 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGACGGACGTACTCTGTCTGACTAC 512775 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| || || || ||||||||||| || | ||||| Sbjct 512776 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 512816 >seq2233 Length=2295209 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| || ||||| ||||| ||||| ||||| || | ||| | || || || Sbjct 1388232 TCAAA-ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCGTAACCCTGGAGGTGGAG 1388290 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| |||||| || || | || ||| ||||||||| | || ||| Sbjct 1388291 CCTAGTGACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCC 1388350 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||| | || || || || ||||| ||| ||||||| ||| | || Sbjct 1388351 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAC 1388410 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || ||||| ||||| || || ||||| || | |||||||| || Sbjct 1388411 TACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGGGGGGG 1388463 >seq23666 Length=5806929 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| || || || ||||| || || |||||| || | |||||||| Sbjct 828903 AAAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTCAAAGTTGAACCC 828844 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || || Sbjct 828843 TCGGATATGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 828784 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 || || | || || || |||||||| || ||||||| | | | ||| || || || Sbjct 828783 CACCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTCTGTCTGACTA 828725 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| || || || ||||||||||| || | ||||| Sbjct 828724 CAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 828683 >seq19202 Length=12282305 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||| | || || || || || || || |||||| || | |||||||| Sbjct 12257267 AAAATGCAGATTTTCATGAAAACCCTTACGGGGAAGACCATCACCCTCAATGTTGAACCC 12257208 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || || Sbjct 12257207 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 12257148 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || |||||||| || ||||||| | ||| ||| || || || Sbjct 12257147 CAGCAAAGCCTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGATGTACTTTGTCTGACTA 12257089 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| || || || ||||||||||| || | ||||| Sbjct 12257088 CAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 12257047 >seq24834 Length=2526834 Score = 89.7 bits (98), Expect = 5e-13 Identities = 154/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| || || || || || || || |||||| | || |||||||| Sbjct 598687 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTTGAGGTTGAACCC 598628 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||| || || | || ||| |||||||| | || || || Sbjct 598627 TCGGATACGACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 598568 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || |||||||| || ||||||| | | | ||| || || || Sbjct 598567 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTCTGTCTGACTA 598509 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGAC 31409 ||||||||||| || || ||||||||||| || | |||| Sbjct 598508 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGAC 598468 >seq18140 Length=5205659 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| || || || || || || || |||||| |||| |||||||| Sbjct 3938808 AAAATGCAGATTTTCGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCC 3938749 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || || Sbjct 3938748 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 3938689 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || ||||||| || |||||| | | | ||| || || || Sbjct 3938688 CAGCAAAGACTGATCTTTACTGGCAAGCAACCGGAAGA-TGGACGTACTTTGTCTGACTA 3938630 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| || || || ||||||||||| || | ||||| Sbjct 3938629 CAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 3938588 >seq17446 Length=896517 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || Sbjct 701951 TCAAA-ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAG 702009 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| |||||| || || | || ||| ||||||||| | || ||| Sbjct 702010 CCTAGTGACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCC 702069 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAG-TTGGAAGACTCTATGACTATGAGC-G 31364 ||||||||| | || || || || ||||| ||| | | ||||| | ||||| | | Sbjct 702070 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTAGAAAGACCC--GCACTATTTCCTG 702127 Query 31365 ATTATAACATTCAAAAAGAATCGACTCT-TCATCTGGT 31401 | || ||||| || ||||| ||||| || || ||||| Sbjct 702128 ACTACAACATCCAGAAAGAGTCGACCCTGCCACCTGGT 702165 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/214 (69%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 31207 AAAGACTC-TGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAA 31265 |||||| | | || ||||| || |||||| | || || || || |||| |||||| Sbjct 702200 AAAGACGCCTCACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGACACCATCGAAA 702259 Query 31266 CGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATAT 31325 || || | || ||| ||||||||| | || |||||||||||| | || || | Sbjct 702260 ATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCCGACCAGCAGAGGCTCATCT 702319 Query 31326 TCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAAT 31385 | || ||||| ||| ||||||| ||| | ||||| ||||| || ||||| | Sbjct 702320 TTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGT 702379 Query 31386 CGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || || ||||| || | |||||||| || Sbjct 702380 CGACCCTGCACCTGGTCCTGCGTCTGAGGGGTGG 702413 >seq16297 Length=2103431 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||| | || || || ||||| || || |||||| || | |||||| | Sbjct 675079 AAAATGCAGATTTTCATGAAAACCCTTACAGGGAAGACCATCACCCTCAAGGTTGAATCC 675138 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || || Sbjct 675139 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 675198 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | | || || |||||||| || |||||||| | | | ||| || || || Sbjct 675199 CAGCAAAGATTGATCTTTGCTGGCAAGCAACTGGAAGAC-CGACGTACTCTGTCTGACTA 675257 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||| ||| || || ||||||||||| || | ||||| Sbjct 675258 CAACATTCGAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 675299 >seq13033 Length=3880709 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| || |||||| | || || || || Sbjct 3665409 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 3665350 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | ||| |||||||| || | || || |||||| Sbjct 3665349 GACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAG 3665290 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA---CTCTATGACTATGAGCGATTAT 31369 |||||||| ||||| |||||||||||| |||| || | | | || | | || || Sbjct 3665289 CAGCGTCTGATATTTGCTGGCAAACAGCTGGAGGATGGCCGCACG-CTCTCA--GACTAC 3665233 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || ||||| || || || || ||||| || Sbjct 3665232 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGCT 3665198 >seq9653 Length=10725 Score = 86.0 bits (94), Expect = 6e-12 Identities = 156/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||| | || || || ||||| || || |||||| || | | |||||| Sbjct 1907 AAAATGCAGATTTTCATGAAAACCCTCACAGGGAAGACCATCACCCTCAAGGCTGAACCC 1966 Query 31250 TCCGACAGTGTC-GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || || | || | |||| || || | || ||| |||||||| | || || | Sbjct 1967 TCGGATA-TGACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTAA 2025 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATT 31367 ||||| | ||||| || |||||||| || ||||||| | | | ||| || || | Sbjct 2026 TCAGCAAAGACTAATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACT 2084 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 | |||||||| || || || ||||||||||| || | ||||| Sbjct 2085 ACAACATTCAGAAGGATTCTACTCTTCATCTTGTGTTGAGACT 2127 >seq20084 Length=6261642 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||| | || || || | || || || |||||| |||| ||||||| Sbjct 3809973 AAAATGCAGATTTTCATGAAAACCCTTATGGGGAAGACTATCACCCTCGAGATTGAACCC 3809914 Query 31250 TCCGACAGTGTC-GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || || | || | |||| || || | || ||| |||||||| | || || || Sbjct 3809913 TCAGATA-TGACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 3809855 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||| | || || | |||||||| || ||||||| | ||| || || || Sbjct 3809854 TCAGCAAAGACTGATCATTGCTGGCAAGCAACTGGAAGATGGTTGTACTTTGTCTGACTA 3809795 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 3809794 CAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTAAGACT 3809753 >seq9996 Length=19681183 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| | || || ||||| || || ||||| || |||||| | || ||||| || Sbjct 16335315 ATGCAGGTGTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 16335256 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | ||| ||||||||||| | || || |||||| Sbjct 16335255 GACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAAGGTATCCCACCTGACCAG 16335196 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||| ||| ||||| ||| |||||||| |||| || | | | | || || ||| Sbjct 16335195 CAGCATCTGATATTTGCTAGCAAACAGCTGGAGGATGGCCGCAGTCTCA--GACTACAAC 16335138 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || ||||| || || || || ||||| || Sbjct 16335137 ATCCAGAAAGAGTCCACCCTGCACCTGGTGCT 16335106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445605244302240