Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq22719 163 6e-35 seq12132 152 1e-31 seq12486 134 3e-26 seq23499 123 5e-23 seq27380 89.7 1e-12 >seq22719 Length=8987742 Score = 163 bits (180), Expect = 6e-35 Identities = 302/440 (69%), Gaps = 5/440 (1%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| |||||||||||||| ||||| ||||||||| |||| | || |||||||| |||| Sbjct 8554856 TTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCT 8554915 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || ||||||| | || | ||||||| ||||| | || ||||| | ||| || | Sbjct 8554916 GGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAG 8554975 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCC 102095 | || ||| | || | || ||||| ||| || |||| ||| | | || | | | Sbjct 8554976 ATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTCAAACA---CATAGTACACAAAC 8555032 Query 102096 CATCAAGAGAAAGGATTCTTGAAATTGTCACTGAA-GCCGTCCGAATTGAACAAGAATTT 102154 ||||| || || | ||||| | | |||| || || || || ||||| || || Sbjct 8555033 CATCAGAGGAGAGAGTAAGAGAAATAATTA-TGAATGCTGTTCGGATAGAACAGGAGTTC 8555091 Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214 ||||| | || ||||||| || | | || ||||| |||| | |||| || ||| Sbjct 8555092 CTCACTGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCACTCTAATGAAGCAATAC 8555151 Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTT 102274 ||||| ||||||||||| | ||| || | ||| |||| | ||| | | || Sbjct 8555152 ATTGAGTTTGTGGCAGACAGACTTATGCTGGAACTGGGTTTTAGCAAGGTTTTCAGAGTA 8555211 Query 102275 ACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAA 102334 || || || | || ||||| |||||||| || || ||||| ||||| ||||| Sbjct 8555212 GAGAATCCATTTGCCTTTATGGAGAATATTTCACTGGAAGGAAAGACTAACTTCTTTGAG 8555271 Query 102335 AAGAGAGTCGCCGAGTATCA 102354 |||||||| | ||||||||| Sbjct 8555272 AAGAGAGTAGGCGAGTATCA 8555291 >seq12132 Length=2475592 Score = 152 bits (168), Expect = 1e-31 Identities = 301/440 (68%), Gaps = 9/440 (2%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||||||||| ||||| ||||||||| |||| | || |||||||| |||||| Sbjct 56856 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGG 56915 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | || | ||||||| ||||| | || ||||| | ||| || || Sbjct 56916 CTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGAT 56975 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 || ||| | || | || ||||| ||| || |||| ||| | | || | | ||| Sbjct 56976 GAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTCAAACA---CCTAGTACACAAACCA 57032 Query 102098 TC--AAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTC 102155 || | |||| || || | ||||| | | | || || || || ||||| || || | Sbjct 57033 TCAGAGGAGAGAGTATGC--GAAATAATTATCAATGCTGTTCGGATAGAACAGGAGTTCC 57090 Query 102156 TCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACA 102215 |||| | | ||||||| || | | || |||||||||| | |||| || |||| Sbjct 57091 TCACTGAGGCTTTGCCTGTGAAGCTCATTGGGATGAACTGCACTCTAATGAAGCAATACA 57150 Query 102216 TTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTA 102275 |||| |||||||||| | ||| || | ||| |||| | ||| | | || Sbjct 57151 TTGAGTTTGTGGCAGGCAGACTTATGCTGGAACTGGGTTTTAGCAAGGTTTTCAGAGTAG 57210 Query 102276 CCAACCCCTTCCCATTCATGGACAATATTTCCCTCG-AGAATAAGACCAACTTTTTTGAA 102334 || || || || ||||| |||||||| || | || || |||| ||||| ||||| Sbjct 57211 AGAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGAT-AGACTAACTTCTTTGAG 57269 Query 102335 AAGAGAGTCGCCGAGTATCA 102354 |||||||| | ||||||||| Sbjct 57270 AAGAGAGTAGGCGAGTATCA 57289 >seq12486 Length=6174982 Score = 134 bits (148), Expect = 3e-26 Identities = 307/452 (68%), Gaps = 14/452 (3%) Strand=Plus/Minus Query 35249 TTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAA 35308 ||||||| || ||| |||| || | | |||||| |||| ||| ||| | || || Sbjct 2654883 TTCTGGAAGGGTGTTTTGGAGGAGTTGTTGTGGTTTATCAAGGGATCCACAAATGCTGAA 2654824 Query 35309 GAATTGGC---CAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTG 35365 || || | |||| | || | | |||||| | || ||||| | | || ||| || Sbjct 2654823 GAGCTGCCTTCCAAG--GGAGTGAAA-ATCTGGGATGCCAATGGATACCAAGACTTTCTG 2654767 Query 35366 GACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAA 35425 || || || || | || |||| ||| || || ||||| || || || || |||||| Sbjct 2654766 GATAGCTTGGGATTCTCCGCCAGAGAAGAAGGGGACTTGGGCCCAGTTTATGGCTTCCAA 2654707 Query 35426 TGGCGTCATTTTGGTGCTGAATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATT 35485 ||| | |||||||| || ||||| || | || ||| |||||| | ||||| || || Sbjct 2654706 TGGAGGCATTTTGGGGCAGAATA-GAGATATGGA-TTCAGATTATTCAGGAAAAGGAGTT 2654649 Query 35486 GATCAATTGGCCAATA-TACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGAT 35544 || ||| || | || | | | | ||| | | | || || ||||| ||||| || || Sbjct 2654648 GACCAACTG-CAAAGAGTGATTGACACCATCAAAACCAACCCTGATGACAGAAGAATCAT 2654590 Query 35545 TATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGAC 35604 | | | |||||||| | ||||||| || ||||| || ||||||||| |||| | Sbjct 2654589 CACGTGCACTTGGAATCCAAGAGATCTTCCTCTGATGGCGCTGCCTCCATGC--CATGCC 2654532 Query 35605 TGCT--CAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGA 35662 || || || || |||| ||||| || |||| |||||| |||| |||||| ||| Sbjct 2654531 CTCTGCCAGTTCTAAGTGGTGAATGGTGAGCTGTCCTGCCAGCTGTACCAGCGATCGGGA 2654472 Query 35663 GATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 || |||| | || ||||| ||||| || || Sbjct 2654471 GACATCGGCCTAGGTGTGCCTTTCAACATCGC 2654440 Score = 116 bits (128), Expect = 7e-21 Identities = 279/412 (68%), Gaps = 14/412 (3%) Strand=Plus/Minus Query 35249 TTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAA 35308 ||||||| || ||| |||| || | |||||| |||| ||| ||| | || ||| Sbjct 332392 TTCTGGAAGGGTGTTTTGGAGGAGTTGCTGTGGTTTATCAAGGGATCCACAAATGCTAAA 332333 Query 35309 GAATTGGC---CAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTG 35365 || || | |||| | || | | |||||| | || ||||| || || || ||| || Sbjct 332332 GAGCTGTCTTCCAAG--GGAGTGAAA-ATCTGGGATGCCAATGGATCCCGAGACTTTCTG 332276 Query 35366 GACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAA 35425 || || || || | || |||| ||| || || ||||| || || || || ||||| Sbjct 332275 GATAGCTTGGGATTCTCCGCCAGAGAAGAAGGGGACTTGGGCCCAGTTTATGGCTTCCAG 332216 Query 35426 TGGCGTCATTTTGGTGCTGAATAT-GATACCTGTTCTTCCGATTATACTGGAAAGGGTAT 35484 ||| | |||||||| || ||||| || | || ||| |||||| | ||| | || | Sbjct 332215 TGGAGGCATTTTGGGGCAGAATACAGAGATATGGA-TTCAGATTATTCAGGACAAGGAGT 332157 Query 35485 TGATCAATTGGCCAATA-TACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGA 35543 ||| ||| || | || | | | | ||| | | | || || ||||| ||||| || | Sbjct 332156 TGACCAACTG-CAAAGAGTGATTGACACCATCAAAACCAACCCTGATGACAGAAGAATCA 332098 Query 35544 TTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGA 35603 | ||| || |||||||| | ||||||| || ||||| || ||||||||| |||| Sbjct 332097 TCATGTGCGCTTGGAATCCAAGAGATCTTCCTCTGATGGCGCTGCCTCCATGC--CATGC 332040 Query 35604 CTGCT--CAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAG 35653 | || || || || |||| || || || |||| |||||| |||| ||| Sbjct 332039 CCTCTGCCAGTTCTAAGTGGTGAACGGTGAGCTGTCCTGCCAGCTGTACCAG 331988 >seq23499 Length=2348749 Score = 123 bits (136), Expect = 5e-23 Identities = 292/438 (67%), Gaps = 5/438 (1%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||||||||| ||||| || |||||| |||| | || |||||||| |||||| Sbjct 2216056 GTAGCCTTTGCTGCAGTGGAAGGCATTTTCTTTTCTGGTTCTTTTGCATCCATATTCTGG 2215997 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | || | ||||||| ||||| | || ||||| | ||| || || Sbjct 2215996 CTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGAT 2215937 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 || ||| | || | || ||||| ||| || |||| ||| | || | | ||| Sbjct 2215936 GAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTCAAACA---CCCAGTACACAAACCA 2215880 Query 102098 TCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTC 102157 ||| || ||| | ||||| | | | || || || | || || || || ||| Sbjct 2215879 TCAGAGGAGAGGGTAAGAGAAATAATTATCAATGCTGTTCGGTTAGAGCAGGAGTTCCTC 2215820 Query 102158 ACAGTTTCCCTGCCTGTTAA-ATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACAT 102216 || | || ||||||| || | | |||| |||||||||| | |||| || |||| Sbjct 2215819 ACTGAGGCCTTGCCTGTGAAGCTCACTGGG-ATGAACTGCACTCTAATGAAGCAACACAT 2215761 Query 102217 TGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTAC 102276 || ||||||||||| | ||| || | ||| |||| | ||| | | || Sbjct 2215760 TGGGTTTGTGGCAGACAGACTTATGCTGGAACTGGGTTTTAGCAAGGTTTTCAGAGTAGA 2215701 Query 102277 CAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAA 102336 || || || || ||||| |||||||| || || ||||| ||||| ||||| | Sbjct 2215700 GAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGAAAGACTAACTTCTTTGAGAC 2215641 Query 102337 GAGAGTCGCCGAGTATCA 102354 |||||| | |||||||| Sbjct 2215640 GAGAGTAGGTGAGTATCA 2215623 >seq27380 Length=10165399 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||||||||| ||||| ||||||||| |||| | || |||||||| |||||| Sbjct 7666634 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGG 7666575 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 ||||||| | || | ||||||| ||||| | || ||||| Sbjct 7666574 CTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGA 7666531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989217296660510