Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq12132 309 3e-79 seq23499 304 1e-77 seq22719 284 1e-71 seq27380 120 3e-22 seq18140 111 1e-19 seq17644 87.8 2e-12 >seq12132 Length=2475592 Score = 309 bits (342), Expect = 3e-79 Identities = 629/917 (69%), Gaps = 29/917 (3%) Strand=Plus/Minus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366 ||||||| | | ||| | ||| |||||| | ||||| || | |||| || | || | Sbjct 57323 ATTCTCTGTTGGACTTGACATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAA 57265 Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426 | || ||||||| ||||| ||||| |||| |||||||||| ||| ||||| | ||| Sbjct 57264 AGAAGTTAGTCTATCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTCTCTACTC 57205 Query 11427 TGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486 |||| || || | |||| | || | | ||| |||| || || || || || | Sbjct 57204 TGAAAACCTTGCTAAAACCCAGTTCCAGCATAAGTCTGCCTGCCACAAACTCAATGTATT 57145 Query 11487 GAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACT 11546 | ||||| | || ||||| || || || | ||| || | ||| | || | |||| Sbjct 57144 GCTTCATTAGAGTGCAGTTCATCCCAATGAGCTTCACAGGCAAAGCCTCAGTGAGGAACT 57085 Query 11547 CCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAA-CT-TCCTTAGATGGTGG 11604 ||| |||||| ||| |||| || ||||| || ||| || |||| |||||| Sbjct 57084 CCTGTTCTATCCGAACAGCATTGATAATTATTT-CGC-ATACTCTCTCCTCTGATGGTTT 57027 Query 11605 ATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACT 11664 |||| || ||||| ||||| | || ||||||||||| |||||||| || ||||| || Sbjct 57026 GTGTACTAGGTGTTTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCT 56967 Query 11665 TATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATAT 11724 || ||||||||||||||||| | || ||||||| ||||||||| || | ||| ||||| Sbjct 56966 AATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATAT 56907 Query 11725 AGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTC 11784 | ||||| |||||||||||||| || || ||||| || ||||| ||||| | | ||| Sbjct 56906 GGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTAC-GCGCGTTC 56848 Query 11785 TCCATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTAC 11841 ||||| || ||| ||| ||||| |||||||| || ||| || || Sbjct 56847 ACCATAGGTAGCCTGTTTGTCCCCAATCCAGCGCAAGGCCCAAT---CTGACTTCTTGAC 56791 Query 11842 GCATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACA 11899 || ||| ||||| || || || | | |||| | |||| | |||| ||| Sbjct 56790 ACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTC--CCTTTCGTTGGGATCTTTTATG 56733 Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 || || || || | | |||||||||||| ||||| || |||||||| || ||||| || Sbjct 56732 TAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAA 56673 Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTC 12019 ||||||||||| || || |||| | ||| || || | ||||| ||| | || || Sbjct 56672 CCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGTTAAATCGCTCCACCAAGTTT 56613 Query 12020 TCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTT 12079 |||||||| || ||||||| | |||||| || || || | || |||||||||| | Sbjct 56612 TCATTTACTATGTCATCACTTGCTGCAAATAAAGCCAGAACGTGGGATATAAAGTATCTC 56553 Query 12080 TC----GTCTTTAGTTAATTTATCCCAATCATCTAAA--TCTTTTGATAAATCTACTTCT 12133 || | ||| || | ||||| | | ||| || || || | || || || Sbjct 56552 TCCTCGGGCTTCAGGGA----TTCCCAGT--GCCAAATGTCCTTGGACAGCTCCACCTCC 56499 Query 12134 TCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTA 12193 || ||||||| || ||| | | | |||||||| | ||||||| | || |||| Sbjct 56498 TCGGCGGTCCAGAAGGAGGCCTCCGCCTTCTTATACATGTGCCAGATACCGTGGTACTCG 56439 Query 12194 ATAGGGAAAATAACGAA 12210 | |||||||| || || Sbjct 56438 ACGGGGAAAATGACAAA 56422 >seq23499 Length=2348749 Score = 304 bits (336), Expect = 1e-77 Identities = 537/776 (69%), Gaps = 15/776 (2%) Strand=Plus/Plus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366 ||||||| | ||||| | ||| |||||| | ||||| |||| |||| |||| || | Sbjct 2215589 ATTCTCTGTTGGATTTGACATCACTCCCATCCTCTGATACTCACCTACTC-TCGTCTCAA 2215647 Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426 | || |||||||| ||||| ||||| |||| |||||||||| ||| ||||| | ||| Sbjct 2215648 AGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTCTCTACTC 2215707 Query 11427 TGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486 |||| || || | |||| | || | | ||| ||||| || || | || | | Sbjct 2215708 TGAAAACCTTGCTAAAACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACCCAATGTGTT 2215767 Query 11487 GAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACT 11546 | ||||| | || ||||| || | || | ||| || | || | || | |||| Sbjct 2215768 GCTTCATTAGAGTGCAGTTCATCCCAGTGAGCTTCACAGGCAAGGCCTCAGTGAGGAACT 2215827 Query 11547 CCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGAT 11606 ||| |||| ||| |||| || ||||| ||| |||| |||||| | Sbjct 2215828 CCTGCTCTAACCGAACAGCATTGATAATTATTTCTCTTACCCTCTCCTCTGATGGTTTGT 2215887 Query 11607 GTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTA 11666 ||| | ||||| ||||| | || ||||||||||| |||||||| || ||||| || | Sbjct 2215888 GTACTGGGTGTTTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAA 2215947 Query 11667 TTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAG 11726 | ||||||||||||||||| | || ||||||| ||||||||| || | ||| ||||| | Sbjct 2215948 TAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGG 2216007 Query 11727 CAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTC 11786 ||||| |||||||||||||| || || ||||| || ||||| ||||| || | ||| | Sbjct 2216008 ATGCAAAAGAACCAGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCTACGACACGTTCAC 2216067 Query 11787 CATA--TA----CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTA 11840 |||| || | |||| | || |||| | |||||| || || ||||| || | Sbjct 2216068 CATAGGTAACCTCTTTGTCCCCAG---TCCAGTGCAAGGCCCAGTCTGCCTTCTTCTTGA 2216124 Query 11841 CGCATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTAC 11898 | || ||| ||||| | || || | | |||| | |||| | |||| ||| Sbjct 2216125 CACAAGGCATCGTTTCAACGGCATTGAAGAGAAATTC--CCTTTCGCTGGGATCTTTTAT 2216182 Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 || || || || | | |||||||||||| ||||| || |||||| | || ||||| || Sbjct 2216183 GTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCCTGGCAATTTGGAA 2216242 Query 11959 TCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATT 12018 |||||||||||| || || |||| | ||| || || ||||| ||| | || || Sbjct 2216243 TCCATAGAAACAGCGGGCTTCTGTAATCTGAACCTCTTGGCTAAATCGCTCCACCAAGTT 2216302 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGT 12074 |||||||| || || | ||| | |||||| || || || | || |||||||| Sbjct 2216303 TTCATTTACTATGCCCTTACTCGCTGCAAAGAAAGCCAGAACGTGGGATATAAAGT 2216358 >seq22719 Length=8987742 Score = 284 bits (314), Expect = 1e-71 Identities = 614/911 (67%), Gaps = 27/911 (3%) Strand=Plus/Minus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366 ||||||| | | ||| | ||| |||||| | ||||| || | |||| || | || | Sbjct 8555325 ATTCTCTGTTGGACTTGACATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAA 8555267 Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426 | || |||||||| ||||| ||||| |||| |||||||||| ||| ||||| | ||| Sbjct 8555266 AGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTCCATAAAGGCAAATGGATTCTCTACTC 8555207 Query 11427 TGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486 |||| || || | |||| | || | | ||| ||||| || || || || || | Sbjct 8555206 TGAAAACCTTGCTAAAACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATT 8555147 Query 11487 GAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACT 11546 | ||||| | |||||||| || || || | ||| || | || | || | |||| Sbjct 8555146 GCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAACT 8555087 Query 11547 CCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGAT 11606 ||| |||||| ||| |||| || ||||| ||| |||| |||||| | Sbjct 8555086 CCTGTTCTATCCGAACAGCATTCATAATTATTTCTCTTACTCTCTCCTCTGATGGTTTGT 8555027 Query 11607 GTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTA 11666 ||| || ||||| ||||| | || ||||||||||| |||||||| || ||||| || | Sbjct 8555026 GTACTATGTGTTTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAA 8554967 Query 11667 TTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAG 11726 | ||||||||||||||||| | || ||||||| ||||||||| || | ||| ||||| | Sbjct 8554966 TAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGG 8554907 Query 11727 CAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTC 11786 ||||| |||||||||||||| || || ||||| || ||||| ||||| || | ||| | Sbjct 8554906 ATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACAACGCGTTCAC 8554847 Query 11787 CATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGC 11843 |||| || ||| ||| ||||| ||||||||| || ||||| | || | Sbjct 8554846 CATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTGGACAC 8554787 Query 11844 ATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTACATA 11901 | ||| ||||| || || || ||| |||| | |||| | |||| ||| | Sbjct 8554786 AAGGCATCGTTTCAATGGCATTGAAAAGAAATTC--CCTTTCGTTGGGATCTTTTATGCA 8554729 Query 11902 TGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCC 11961 || || || | |||||||||||||| ||||| || |||||||| || || Sbjct 8554728 AGTGTCAATAAGGAAACTATACATTTCAGAATGTATGTTTTCCATGGCAAT--------- 8554678 Query 11962 ATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTC 12021 |||| || | |||| | ||| || || |||| ||| | || || || Sbjct 8554677 -----AACAGCGGGTTTCTGTAATCTGAACTTCTTGGCTAAATTGCTCCACCAAGTTTTC 8554623 Query 12022 ATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTC 12081 |||||| || ||||||| | |||||| || || || | || |||||||||| | || Sbjct 8554622 ATTTACTATGTCATCACTTGCTGCAAAGAAAGCCAGAACGTGGGATATAAAGTATCTCTC 8554563 Query 12082 GTCTTTAG-TTAATTTA-TCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACG 12139 ||| | || | | ||||| | | || || | | || || || || || Sbjct 8554562 --CTTGGGCTTCAGGGATTCCCAGTGCCGAATGTCCTTGAACAGGTCCACCTCCTCGGCG 8554505 Query 12140 GTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGG 12199 ||||| || ||| | | | |||||||| | |||||||| || |||| || ||| Sbjct 8554504 GTCCAGAAGGAGGCCTCCGCCTTCTTATACATCTGCCAGATATTGTGGTACTCGATGGGG 8554445 Query 12200 AAAATAACGAA 12210 ||||| || || Sbjct 8554444 AAAATGACAAA 8554434 >seq27380 Length=10165399 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || ||||||||||||||||| | || ||||||| ||||||||| || Sbjct 7666513 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 7666572 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| || || ||||| || ||||| ||| Sbjct 7666573 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 7666632 Query 11774 ACTACTCTTTCTCC 11787 || || | ||| || Sbjct 7666633 ACGACCCGTTCACC 7666646 >seq18140 Length=5205659 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| ||| | Sbjct 751641 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTTTTCT 751582 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| | ||| || ||||| || || | Sbjct 751581 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGG 751522 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 751521 CCACCACTCTTTCCCC 751506 >seq17644 Length=22291198 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| || || |||||||| Sbjct 3021680 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATA 3021621 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || || |||||||| || || || || | Sbjct 3021620 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 3021561 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 3021560 CTGTTTCTTATACCAT 3021545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468355416571680