Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq12486 196 4e-45 seq16616 138 1e-27 seq19633 132 4e-26 >seq12486 Length=6174982 Score = 196 bits (216), Expect = 4e-45 Identities = 432/647 (67%), Gaps = 2/647 (0%) Strand=Plus/Plus Query 20913 AGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGC 20972 ||||||| ||| || || | ||| || ||||| || || || ||||| || || Sbjct 2654317 AGCTGAATTTTCAGTGGCTCGATGTGATTCAGGTAAATATGTGCATCTCCCAAAGTATGT 2654376 Query 20973 ACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAG 21032 |||||||| ||||| |||||||||||| ||| ||||||| ||| | || ||||| ||| Sbjct 2654377 ACAAAGTCACCCGGCTTCAGGCCCGTGATGTGCGCGATCATGTACATGAGCAGGGCCTAG 2654436 Query 21033 CTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAG 21092 ||||||||||| || || || || ||||| ||||| | || | |||||||||||||||| Sbjct 2654437 CTGGCGATGTTGAAAGGCACACCTAGGCCGATGTCTCCCGATCGCTGGTACAGCTGGCAG 2654496 Query 21093 GACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||||||| || |||| || ||||| || | | || || ||||| || |||||| Sbjct 2654497 GACAGCTCACCATTCACCACTTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATC 2654556 Query 21153 CGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTG 21212 | | || || || ||||| | |||| | | ||| | | || | || | Sbjct 2654557 AGAGGAAGATCTCTTGGATTCCAAGTGCACGTGATGATTCTTCTGTCATCAGGGTTGGTT 2654616 Query 21213 TTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCG 21272 || || || | ||| |||| ||||| || || | || || | | || Sbjct 2654617 TTGATGGTGTCAATCACTCTTTGCAGTTGGTCAACTCCTTTTCCTGAATAATCTGAATC- 2654675 Query 21273 GCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCG 21332 | || || || ||||||||||| ||||| ||||| || || || || |||| || Sbjct 2654676 -CATATCTCTATTCTGCCCCAAAATGCCTCCATTGGAAGCCATAAACTGGGCCCAAGTCC 2654734 Query 21333 CCCTCGCGGCGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCC 21392 || || | | | ||| ||| ||| |||| | || | || | || ||| Sbjct 2654735 CCTTCTTCTCTGGCGGAGAATCCCAAGCTATCCAGAAAGTCTTGGTATCCATTGGCATCC 2654794 Query 21393 CAAATTTTTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCAC 21452 || ||||| || || | | ||| || | | ||||| ||| ||||||||||| Sbjct 2654795 CAGATTTTCACTCCCTTGGAAGGCAGCTCTTCAGCATTTGTGGATCCCTTGATAAACCAC 2654854 Query 21453 AGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCG 21512 | ||||||||||| || ||| |||| |||| || ||| |||| ||||||||| || Sbjct 2654855 AACAACTCCTCCAAAACACCCTTCCAGAACAGATGTTCGGTTGTTAGCAGAGGAAATTCA 2654914 Query 21513 TCCCTGAGGTTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCC 21559 || || || | || || ||||| | |||||| ||| ||| || Sbjct 2654915 TCTCTCGGGCTGTAGCGCGCCTGCCTGCAGAACACCGACAGGGTCCC 2654961 Score = 132 bits (146), Expect = 4e-26 Identities = 319/483 (66%), Gaps = 0/483 (0%) Strand=Plus/Plus Query 21077 CTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACA 21136 |||||||||||||||||||||||| || |||| || ||||| || | | || || Sbjct 331988 CTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACTTAGAACTGGCAGAGGGCATGGCA 332047 Query 21137 AGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCG 21196 ||||| || |||||| | | || || || ||||| |||||||| | ||| | | Sbjct 332048 TGGAGGCAGCGCCATCAGAGGAAGATCTCTTGGATTCCAAGCGCACATGATGATTCTTCT 332107 Query 21197 ATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACC 21256 || | || | || || || | ||| |||| ||||| || || || || Sbjct 332108 GTCATCAGGGTTGGTTTTGATGGTGTCAATCACTCTTTGCAGTTGGTCAACTCCTTGTCC 332167 Query 21257 CTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTA 21316 || | | || | ||||| || ||||||||||| ||||||||||| || || Sbjct 332168 TGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATA 332227 Query 21317 CACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCG 21376 || || |||| || || || | | | ||| ||| ||| |||| | || Sbjct 332228 AACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTATCCAGAAAGTCTCG 332287 Query 21377 GGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGA 21436 ||| || | || ||||| ||||| || || | ||||| || | | | ||||| Sbjct 332288 GGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGA 332347 Query 21437 GCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGT 21496 ||| |||||||||||||||||||||||| || ||| |||| |||| || ||| || Sbjct 332348 TCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCTTCCAGAACAGATGTTCGGTTGT 332407 Query 21497 TAACAGAGGAAACTCGTCCCTGAGGTTATATCGGGCCTGAAGCCCGAACACGGACCTGGT 21556 | ||||||||| || || || || | || || ||||| | |||||| ||| ||| Sbjct 332408 CAGCAGAGGAAATTCATCTCTCGGGCTGTAGCGCGCCTGCCTGCAGAACACCGACAGGGT 332467 Query 21557 GCC 21559 || Sbjct 332468 CCC 332470 >seq16616 Length=7972016 Score = 138 bits (152), Expect = 1e-27 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||||||||||| ||| ||||||| ||||| || |||||||||||||| ||||| || | Sbjct 2012181 TCAGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAG 2012240 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | || ||||||||||||||||| |||||||| || Sbjct 2012241 GCACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAAGACAGCTCACCGTTCA 2012300 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||| || ||||| || | | || || ||||| || |||||| Sbjct 2012301 CCACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATC 2012344 >seq19633 Length=3468624 Score = 132 bits (146), Expect = 4e-26 Identities = 258/377 (68%), Gaps = 22/377 (6%) Strand=Plus/Minus Query 21279 CTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCG 21338 ||||| || ||||||||||| ||||||||||| || || || || |||| || || || Sbjct 1959910 CTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCT 1959851 Query 21339 C-GGCGG----TCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCC 21393 | ||||| |||| |||| | ||| |||| | | ||| || | || |||| Sbjct 1959850 CTGGCGGAGAATCCC--AAGCTAT------CCAGAAAGTCTCAGGATCCATTGGCATCCC 1959799 Query 21394 AAATTTTTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACA 21453 | ||||| || || | ||||| || | | | ||||| ||| |||||||||||| Sbjct 1959798 AGATTTTCACTCCCTTGGATGACAGCTCTTTAGCATTTGTGGATCCCTTGATAAACCACA 1959739 Query 21454 GCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGT 21513 |||| ||||||| || ||| |||| |||| | |||||| || | ||||||||| || | Sbjct 1959738 GCAATTCCTCCAAAACACCCTTCCAGAACAGACATTTGGTTGTCAGCAGAGGAAATTCAT 1959679 Query 21514 CCCTGAGGTTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTGT 21573 | || ||| | || || ||||| | |||||| ||| ||| ||| ||| || | || Sbjct 1959678 CTCTCAGGCTGTAGCGCGCCTGCCTGCAGAACACCGACAGGGTCCCCGTGCCGGTGCGGT 1959619 Query 21574 CCTCCCTCTGCACGCCGTGTTTAATAATTAAATCCAGGTGCGCCAAGTACTGCAGCTCGC 21633 | | | | ||| ||| || || || | ||| || |||||||||||| | Sbjct 1959618 CGTGACGCGGCA----GTG---AAGGATGTGCTCGATCTGCCTCAGGTACTGCAGCTCCC 1959566 Query 21634 CGT--GGTCGCCGCGGC 21648 ||| || |||||||| Sbjct 1959565 CGTGAGGCAGCCGCGGC 1959549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427625214574560