Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq23499 141 7e-29 seq12132 132 3e-26 seq22719 118 8e-22 >seq23499 Length=2348749 Score = 141 bits (156), Expect = 7e-29 Identities = 383/569 (67%), Gaps = 43/569 (8%) Strand=Plus/Minus Query 22353 GAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACT--GATGTACGC 22410 |||||| | || || || ||||||| ||||||||||| || || | || | || Sbjct 2216447 GAAGGCGGAGGCCTCCTTCTGGACCGCCGAGGAGGTGGACCT--GTCCGAGGACATTCGG 2216390 Query 22411 CATTGGACAGAAAAACTGA---CCGAGGCTGAGCGCAGGTTCATGTCTCACATACTGGCA 22467 || ||| ||| |||| |||||| ||| | || || || ||| | ||||| Sbjct 2216389 CACTGG---GAATCCCTGAAGCCCGAGGA-GAGAGAC--TTTATATCCCACGTTCTGGCT 2216336 Query 22468 TTCTTTGCAATGGCAGATGGCATTGTAGGCGACAACCTTGTGT-GCAATTTCGCAAAAGA 22526 ||||||||| | | ||||| ||| || ||| | ||| || |||| || || || Sbjct 2216335 TTCTTTGCAGCGAGTAAGGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGCCAA-GA 2216277 Query 22527 ACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAATGGAAAATAT 22586 || | ||| |||||||| | ||||||||| || || | || | |||||| || Sbjct 2216276 GGTTCAG---ATTACAGAAGCCCGCTGTTTCTATGGATTCCAAATTGCCAGGGAAAACAT 2216220 Query 22587 ACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAGAATCAAGCCGC 22646 |||| |||||||||||| || || ||| ||| | | |||| ||| | ||| Sbjct 2216219 ACATTCTGAAATGTATAGTCTCCTTATTGACACTT----ACATAAA-AGATCCCAGCGAA 2216165 Query 22647 A------TTGTTTTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGCACAGTGG 22698 | || | |||| || | |||| ||||| ||||| || |||||| | ||| Sbjct 2216164 AGGGAATTTCTCTTCAATGCCGTTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGACTGG 2216105 Query 22699 GC--TGCACAATGG-CTGAATGCCACACATAAGT---CTATCGCAACACGTCTCTTGGCC 22752 || ||||| ||| ||| | ||| | | || |||| | | |||| || | ||| Sbjct 2216104 GCCTTGCAC--TGGACTG---GGGACAAAGAGGTTACCTATGGTGA-ACGTGTCGTAGCC 2216051 Query 22753 TTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTGAAG 22812 ||||| || || |||||| | | |||||||| || ||||| ||||||||||||| ||| Sbjct 2216050 TTTGCTGCAGTGGAAGGCATTTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCTCAAG 2215991 Query 22813 AAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAAGGT 22872 ||||| || ||||| || | | ||||| || || | |||||| | || || ||| Sbjct 2215990 AAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGATGAGGGT 2215931 Query 22873 CTACACTGTGACTTTGCTTGTATGCTGTT 22901 |||||||||| |||||||| || |||| Sbjct 2215930 TTACACTGTGATTTTGCTTGCCTGATGTT 2215902 >seq12132 Length=2475592 Score = 132 bits (146), Expect = 3e-26 Identities = 398/597 (67%), Gaps = 43/597 (7%) Strand=Plus/Plus Query 22344 CATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGA 22403 |||||| |||||||| | || || || ||||||| ||||||||||| || | || Sbjct 56460 CATGTATAAGAAGGCGGAGGCCTCCTTCTGGACCGCCGAGGAGGTGGAGCTGTCCAAGGA 56519 Query 22404 TGTACGCCATTGGACAGAAAAACTGA---CCGAGGCTGAGCGCAGGTTCATGTCTCACAT 22460 | | || ||| ||| |||| |||||| || | || || || ||| | Sbjct 56520 CATTTGGCACTGG---GAATCCCTGAAGCCCGAGG---AGAGATACTTTATATCCCACGT 56573 Query 22461 ACTGGCATTCTTTGCAATGGCA---GATGGCATTGTAGGCGACAACCTTGTGT-GCAATT 22516 ||||| || |||||| ||| |||| ||| ||| || ||| | ||| || ||| Sbjct 56574 TCTGGCTTTATTTGCA---GCAAGTGATGACATAGTAAATGAAAACTTGGTGGAGCGATT 56630 Query 22517 TCGCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAA 22576 | | || ||| || | ||| |||||||| | ||||||||| || || | || | Sbjct 56631 TAACCAA-GAAGTTCAG---ATTACAGAAGCCCGCTGTTTCTATGGTTTCCAAATTGCCA 56686 Query 22577 TGGAAAATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAG- 22635 ||||||| |||||| |||||||||||| || || ||| ||| | || ||||| Sbjct 56687 TGGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATA---AAAGATC 56743 Query 22636 --AATCAAGCCGCATTGTT-TTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGG 22690 || || | ||| | |||| || |||| ||||| ||||| || ||| Sbjct 56744 CCAACGAAAGGGAATTTCTCTTCAATGCCATTGAAACGATGCCTTGTGTCAAG---AAGT 56800 Query 22691 CACAGTGGGC--TGCACAATGGCTGAATGCCACACA---TAAGTCTATCGCAACACGTCT 22745 || | ||||| ||| | ||| | | || ||| || |||| | | ||| | Sbjct 56801 CAGATTGGGCCTTGCGC--TGGATTGGGGACAAACAGGCTAC--CTATGGTGA-ACG-CG 56854 Query 22746 CTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTG 22805 | | |||||||| || || |||||| || | |||||||| || ||||| |||||||||| Sbjct 56855 CGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTG 56914 Query 22806 GCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGA 22865 ||| |||||||| || ||||| || | | ||||| || || | |||||| | || Sbjct 56915 GCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGA 56974 Query 22866 CGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 || ||| |||||||||| |||||||| || |||| | || | | | ||||||| Sbjct 56975 TGAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTCAAACACCTAGTACACAAACC 57031 >seq22719 Length=8987742 Score = 118 bits (130), Expect = 8e-22 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| || || |||||| || | |||||||| || ||||| ||||||||||||| Sbjct 8554861 GCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCTC 8554920 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 |||||||| || ||||| || | | ||||| || || | |||||| | || || Sbjct 8554921 AAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGATGAG 8554980 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 ||| |||||||||| |||||||| || |||| | || || | | ||||||| Sbjct 8554981 GGTTTACACTGTGATTTTGCTTGCCTGATGTTCAAACACATAGTACACAAACC 8555033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356108032331566