Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq22126 102 8e-17 seq16305 100 3e-16 seq2233 96.9 3e-15 seq24834 95.1 1e-14 seq17271 91.5 1e-13 seq19444 89.7 5e-13 seq17446 87.8 2e-12 seq20631 82.4 8e-11 seq17940 82.4 8e-11 seq11497 82.4 8e-11 >seq22126 Length=6662745 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 || |||| || | ||| | || |||||||| || ||||| || || || |||| | Sbjct 461648 AAGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAAGGTGCGC 461589 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||||| |||||||| |||||| ||||| | ||||| || ||||| ||||||||| Sbjct 461588 CCATCTTCCAGCTGTTTCCCAGCAAAGATCGATCTCTGCTGGTCAGGAGGGATGCCTTCT 461529 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 ||||| ||| ||| || | | || | ||||| ||||||| |||||| ||| Sbjct 461528 TTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCACGGGTG 461469 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGC 139762 | |||||||| |||| || || | ||| || ||| Sbjct 461468 ATGGTCTTGCCAGTCAGAGTCTTCATGAAGATCTGC 461433 >seq16305 Length=36878 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| ||||| | |||| |||||| ||||| || || Sbjct 3072 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCGTCTTCCAGCTGCTTGCCT 3131 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| ||| | || ||||||||||| || ||| || || Sbjct 3132 GCAAAGATGAGCCTCTGCTGGTCGAGGGGGATGCCTTCTTTATCTTGGATCTTGGCCTTC 3191 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||| ||||||||||||| | ||| | ||||||||||| | || Sbjct 3192 ACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 3251 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 3252 TTCACGAAGATCTGCATA 3269 >seq2233 Length=2295209 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||||| || | ||| | || |||||||| || ||||| || || | |||| Sbjct 1388452 ACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCC 1388393 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| ||||| || || ||| |||| || | ||||| ||||| || |||||||| || Sbjct 1388392 ATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCCTT 1388333 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| || || | | ||| | ||||| | ||||||||||| | ||| || Sbjct 1388332 ATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTCCACCTCCAGGGTTAC 1388273 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| || || ||||| || ||||| Sbjct 1388272 GGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1388237 >seq24834 Length=2526834 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || ||||| ||||||||||| || || || || | || | ||||| || || Sbjct 598482 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCA-TCTTCCAGTTG 598540 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||||| | ||||||||| ||||| || ||||| || || ||| || Sbjct 598541 CTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 598600 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | ||| || || | ||| || ||||||| ||| | ||||| || || Sbjct 598601 GGCCTTTACATTTTCTGTCGTATCCGAGGGTTCAACCTCAAGGGTGATGGTCTTCCCCGT 598660 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| || ||||| Sbjct 598661 AAGGGTTTTCACGAAAATCTGCAT 598684 >seq17271 Length=5220743 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| |||||||| |||| | |||||| | || || || ||||| |||||||| ||| Sbjct 580265 TCTTCCAGCTGTTTCCCAGAAAAGATCAACCTCTGTTGGTCAGGAGGGATGCCTTCCTTG 580206 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| ||| || | | || ||||| ||||||| ||||||| ||| | Sbjct 580205 TCCTGGATATTTGCCTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCAAGGGTGATG 580146 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||||| || || ||||| || ||||| Sbjct 580145 GTCTTGCCGGTCAGAGTATTCACGAAGATCTGCAT 580111 >seq19444 Length=8941331 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/196 (70%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 139572 ACTCTTTTTGAATGTTATAATCGCTCATTGTG---CTCGAGTCTTCGAGCTGTTTACCAG 139628 |||||||||| ||||| || || | ||| ||| ||||| || ||||| || | Sbjct 7263347 ACTCTTTTTGGATGTTTTAGTCAGAAAGAGTGTGGCTC---TCTTCCAGTTGTTTGCCTG 7263403 Query 139629 CATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTA 139688 || |||| || | ||||| || | || ||||||||||| || ||| || ||| | Sbjct 7263404 CAAAGATGAGCCTCTGCTGGTCAGTGGGGATGCCTTCTTTATCCTGGATCTTGGCTTTCA 7263463 Query 139689 GCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTT 139748 | |||| ||||| ||||||||||||| | ||| | |||||||| ||||| || | Sbjct 7263464 CATTTTCCGTGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCT 7263523 Query 139749 TTACGAATATTTGCAT 139764 | | ||| |||| ||| Sbjct 7263524 TCATGAAGATTTTCAT 7263539 >seq17446 Length=896517 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGTCTT-CGAGCTGTTTAC 139625 || |||||||| || ||||| || || | || |||| | ||||| | ||||| || | Sbjct 702152 GTCGACTCTTTCTGGATGTTGTAGTCAGGAAATAGTGC--GGGTCTTTCTAGCTGCTTGC 702095 Query 139626 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTT 139685 | ||| |||| || | ||||| ||||| || |||||||| || || ||| || | Sbjct 702094 CTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCT 702035 Query 139686 TTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 | | | ||| | ||||| | ||||||||||| | ||| | |||||||| |||| | Sbjct 702034 TCACATTTTCGATGGTGTCACTAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGG 701975 Query 139746 TTTTTACGAATATTTGCAT 139764 | || ||||| || ||||| Sbjct 701974 TCTTCACGAAGATCTGCAT 701956 >seq20631 Length=3741062 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| |||||||| ||||||||||| || || | || | || | ||||| || || Sbjct 1078064 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGAGTACGTCCA-TCTTCTAGTTG 1078006 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||||||||||| | ||||||||| ||||| || ||||| || || ||| || Sbjct 1078005 CTTGCCAGCATAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 1077946 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | ||| || || | ||| || |||| | ||| | ||||| | || Sbjct 1077945 GGCCTTTACGTTTTCTTTCGTATCTGAGGGTTCAACCTGGAGGGTGATAGTCTTCTCCGT 1077886 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| | ||| || ||||| Sbjct 1077885 AAGAGTTTTCATGAAAATCTGCAT 1077862 >seq17940 Length=33973456 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 139625 CCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGT 139684 || ||| | ||||||| ||||| || || | |||||||||||||| |||||| | Sbjct 6339102 CCCGCAAATATCAGACACTGCTGGTCAGGCAGGATGCCTTCTTTGTCTTGGATTTTAGCT 6339043 Query 139685 TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAAC 139744 || | | || | ||||| ||||||||||||||| ||| || |||||||| || | Sbjct 6339042 TTGAAATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGACAGTCTTGCCCGTGAGG 6338983 Query 139745 GTTTTTACGAATATTTGCAT 139764 || || || || || ||||| Sbjct 6338982 GTCTTCACAAAGATCTGCAT 6338963 >seq11497 Length=860054 Score = 82.4 bits (90), Expect = 8e-11 Identities = 128/180 (71%), Gaps = 5/180 (3%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTT---TTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAG 139617 |||| |||||||| | |||||||||| || || || |||| || | ||||| || Sbjct 458476 TGAAGGGTAGACTCCTCCTTTTGAATGTTGTAGTCAGACAAAGTGCGTCCA-TCTTCCAG 458534 Query 139618 CTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGAT 139677 || || |||||| ||||||| | ||||||||| ||||| || ||||| || || ||| Sbjct 458535 TTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGGATTCCTTCCTTATCCTGGAT 458594 Query 139678 TTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCC 139737 || |||| | ||| | || || | ||| || ||||||| ||| | ||||| || Sbjct 458595 CTTGGCCTTTACGTTTTCTATCGTATCTGAGGGTTCAACCTCAAGGGTGATGGTCTTCCC 458654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495884660462400