Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq12132 322 5e-83 seq23499 286 3e-72 seq22719 280 1e-70 seq27380 120 3e-22 seq24714 104 2e-17 >seq12132 Length=2475592 Score = 322 bits (356), Expect = 5e-83 Identities = 562/810 (69%), Gaps = 12/810 (1%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 57349 TAGAAGTCAGCATCCAAAGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 57291 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || |||||||||||||| | ||||||||||| ||||| || Sbjct 57290 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTATCCTTCCAGTGAAATATTCTC 57231 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702 |||||| ||||||||||| | | || || || | |||| ||||| | | | Sbjct 57230 CATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATAAG 57171 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 ||| | || | ||||||||| ||||| ||||| | || ||||| || || || || Sbjct 57170 TCTGCCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAGTTCATCCCAATGAGCTT 57111 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 ||||| | | || | || || | |||||| ||||| | | ||||| || Sbjct 57110 CACAGGCAAAGCCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCAT---TGATAATTAT 57054 Query 13823 TGTA-ATAATCTCA--TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13879 | ||| |||| | || || | | ||| ||||| || || | || ||||| Sbjct 57053 TTCGCATACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATCAGGCAAGCAAA 56994 Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939 |||||| || | ||||||||||| ||||||||||| || |||||||| | || ||||| Sbjct 56993 ATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCAT 56934 Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999 || ||||||||| || | ||| ||||| | ||||| || || |||||||| || || || Sbjct 56933 CAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTC 56874 Query 14000 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14059 ||||||||||| |||| ||||| ||| | | || | ||||| | ||||| Sbjct 56873 CACTGCAGCAAAGGCTA-CGCGCGTTCACCATAGGTAGCCTGTTTGTCCCCAATCCAGCG 56815 Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA 14119 ||||| || || || || | | || ||| |||||||| ||||| || | | | Sbjct 56814 CAAGGCCCAATCTGA---CTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAA 56758 Query 14120 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14179 |||| | || || | | | ||||| || |||||||| | |||||||||||||| || Sbjct 56757 TTCCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATG 56698 Query 14180 TATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 |||||||||||| || || || |||||||| || || | ||||| | || ||||| Sbjct 56697 TATGTTTTCCATGGCAATTTGGAAACCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 56638 Query 14240 CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC 14299 || ||||| || |||| |||||||| ||||| ||||||| |||||||| || || Sbjct 56637 TTGGTTAAATCGCTCCACCAAGTTTTCATTTACTATGTCATCACTTGCTGCAAATAAAGC 56578 Query 14300 CAATATGTTTTTAATAAAGTATTGCTCTTC 14329 || | || ||||||||| ||| || Sbjct 56577 CAGAACGTGGGATATAAAGTATCTCTCCTC 56548 >seq23499 Length=2348749 Score = 286 bits (316), Expect = 3e-72 Identities = 535/782 (68%), Gaps = 8/782 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTG-TTAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | || || || || ||||| | Sbjct 2215563 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGATTTGACATCACTCCCATCCT 2215621 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| |||| ||||| | |||||||||||||| || ||||||||||| ||||| || Sbjct 2215622 CTGATACTCACCTACTCTCGTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 2215681 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702 |||||| ||||||||||| | | || || || | |||| ||||| | | | Sbjct 2215682 CATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATAAG 2215741 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 ||| || || | |||| |||| | ||| ||||| | || ||||| || | || || Sbjct 2215742 TCTGTCTGCCACAAACCCAATGTGTTGCTTCATTAGAGTGCAGTTCATCCCAGTGAGCTT 2215801 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 ||||| | | || | || || | |||| ||||| | | ||||| || Sbjct 2215802 CACAGGCAAGGCCTCAGTGAGGAACTCCTGCTCTAACCGAACAGCAT---TGATAATTAT 2215858 Query 13823 TGTAATAA---TCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13879 | | | |||| | || || | | | | ||||| || || | || ||||| Sbjct 2215859 TTCTCTTACCCTCTCCTCTGATGGTTTGTGTACTGGGTGTTTGAACATCAGGCAAGCAAA 2215918 Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939 |||||| || | ||||||||||| ||||||||||| || |||||||| | || ||||| Sbjct 2215919 ATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCAT 2215978 Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999 || ||||||||| || | ||| ||||| | ||||| || || |||||||| || || || Sbjct 2215979 CAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAAATGCCTTC 2216038 Query 14000 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14059 ||||||||||| |||| | ||||| ||| | | | | ||||| | |||| | Sbjct 2216039 CACTGCAGCAAAGGCTACGACACGTTCACCATAGGTAACCTCTTTGTCCCCAGTCCAGTG 2216098 Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA 14119 ||||| || | || || || | | || ||| ||||||| ||||| || | | | Sbjct 2216099 CAAGGCCCAGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAACGGCATTGAAGAGAAA 2216158 Query 14120 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14179 |||| | || | | | | ||||| || |||||||| | |||||||||||||| || Sbjct 2216159 TTCCCTTTCGCTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATG 2216218 Query 14180 TATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 |||||||||| | || || || || ||||| || || | ||||| | || || || Sbjct 2216219 TATGTTTTCCCTGGCAATTTGGAATCCATAGAAACAGCGGGCTTCTGTAATCTGAACCTC 2216278 Query 14240 CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC 14299 | ||||| || |||| |||||||| ||||| || | ||| |||||||| || || Sbjct 2216279 TTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCCTTACTCGCTGCAAAGAAAGC 2216338 Query 14300 CA 14301 || Sbjct 2216339 CA 2216340 >seq22719 Length=8987742 Score = 280 bits (310), Expect = 1e-70 Identities = 530/779 (68%), Gaps = 22/779 (3%) Strand=Plus/Minus Query 13527 AAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTTTTG 13585 || ||| |||| || | |||| ||| || | || | | || || || ||||| | || Sbjct 8555348 AAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCTCTG 8555290 Query 13586 ATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13645 ||| || | ||||| || |||||||||||||| || ||||||||||| ||||| ||||| Sbjct 8555289 ATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTCCAT 8555230 Query 13646 AAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCT 13705 ||| |||||||||| | | || || || | |||| ||||| | | | ||| Sbjct 8555229 AAAGGCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATAAGTCT 8555170 Query 13706 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13765 || || | ||||||||| ||||| ||||| | |||||||| || || || || || Sbjct 8555169 GTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCAC 8555110 Query 13766 AGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGT 13825 ||| | | || | || || | |||||| ||||| | | ||||| ||| Sbjct 8555109 AGGCAAGGCCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCAT---TCATAATTATTTC 8555053 Query 13826 AATAA---TCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13882 | | |||| | || || | | || ||||| || || | || |||||||| Sbjct 8555052 TCTTACTCTCTCCTCTGATGGTTTGTGTACTATGTGTTTGAACATCAGGCAAGCAAAATC 8554993 Query 13883 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13942 ||| || | ||||||||||| ||||||||||| || |||||||| | || ||||||| Sbjct 8554992 ACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAG 8554933 Query 13943 TCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAAC 14002 ||||||||| || | ||| ||||| | ||||| || || |||||||| || || || || Sbjct 8554932 TCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCAC 8554873 Query 14003 TGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCT 14062 ||||||||| |||| | ||||| ||| | | || | ||||| | ||||| Sbjct 8554872 TGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAA 8554813 Query 14063 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTC 14122 ||||| || | || || | | | || ||| |||||||| ||||| || | | |||| Sbjct 8554812 GGCCCAATCTGCCTTCTTCTGGACACAAGGCATCGTTTCAATGGCATTGAAAAGAAATTC 8554753 Query 14123 CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 14182 | | || || | | | ||| | || |||||||| || |||||||||||||| ||||| Sbjct 8554752 CCTTTCGTTGGGATCTTTTATGCAAGTGTCAATAAGGAAACTATACATTTCAGAATGTAT 8554693 Query 14183 GTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGA 14242 ||||||||| || || | || | | ||| | || ||||| Sbjct 8554692 GTTTTCCATGGC--------------AATAACAGCGGGTTTCTGTAATCTGAACTTCTTG 8554647 Query 14243 GTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14301 | |||| || |||| |||||||| ||||| ||||||| |||||||| || |||| Sbjct 8554646 GCTAAATTGCTCCACCAAGTTTTCATTTACTATGTCATCACTTGCTGCAAAGAAAGCCA 8554588 >seq27380 Length=10165399 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 7666511 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 7666570 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || || |||||||| || || || ||||||||||| | Sbjct 7666571 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 7666630 Query 14014 CTATTAATCGTTCTCC 14029 ||| | ||||| || Sbjct 7666631 CTACGACCCGTTCACC 7666646 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 7664671 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 7664729 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 7664730 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 7664789 Query 13643 CATAAAATCAAATGGATT 13660 |||||| ||||||||||| Sbjct 7664790 CATAAAGTCAAATGGATT 7664807 >seq24714 Length=5211462 Score = 104 bits (114), Expect = 2e-17 Identities = 269/405 (66%), Gaps = 10/405 (2%) Strand=Plus/Plus Query 13893 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 13952 |||||||| || ||||||||||| || |||||||| | || | ||||| || | |||| Sbjct 5055819 CCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGACATCAGTCATTGTTTC 5055878 Query 13953 tttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 14012 || | || ||||| | || || || || ||| |||| | || || | || ||||| Sbjct 5055879 TTGAGGCAGAATATCGATGCGAAAGAACCAGAAGAGAAGGTGCCTTCTA-TG--GCAAAG 5055935 Query 14013 GCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCA 14072 ||| | |||||||| | || | ||||||| ||||| ||||| || Sbjct 5055936 GCTGCAACAAGTTCTCCATGGGTAGCATCTTTGTTCACAATCCAACACAAGGCCCAATCT 5055995 Query 14073 GAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTA 14132 | | | | | | || ||| ||||||| ||||| || | | ||||| | ||||| Sbjct 5055996 GCCTCCTCCCTGACACAAGGCATCCTTTCAATGGCATTGAAGAGAAATTCCATTTCTTTG 5056055 Query 14133 GT-ACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCAT 14191 | ||| || |||| ||||||| | ||| ||| ||||| | ||||||||||| Sbjct 5056056 TTGTCTTTAA---CATGTGTCAATAAAGAGATTATCCATGTCAGAATAGATGTTTTCCAT 5056112 Query 14192 AGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCT 14251 ||| || || || ||||| ||||| | ||| | || ||||| | |||| Sbjct 5056113 AGCAATTTGGAAGCCATAGAAGCA---GGTTTCTGTAGCCTGAACTTCTTGGACAAATTG 5056169 Query 14252 TTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14296 || |||| |||| || |||| | ||||| | |||||||| || Sbjct 5056170 CTCCACCAAGTTTTTATCAACTGTGCCATCGCATGCTGCAAAGAA 5056214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479554566334800