Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq12132 306 4e-78 seq23499 275 6e-69 seq22719 260 1e-64 seq27380 114 1e-20 >seq12132 Length=2475592 Score = 306 bits (338), Expect = 4e-78 Identities = 613/899 (68%), Gaps = 16/899 (2%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 57349 TAGAAGTCAGCATCCAAAGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 57291 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | ||||| || ||||| |||||||| | ||||||||||| ||||| || Sbjct 57290 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTATCCTTCCAGTGAAATATTCTC 57231 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 |||||| || |||||||| | | || || || | |||| ||||| | | | Sbjct 57230 CATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATAAG 57171 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 ||| | || | ||||||||| ||||| ||||| | || ||||| || || || || Sbjct 57170 TCTGCCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAGTTCATCCCAATGAGCTT 57111 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 13610 ||||| | | ||| | || || | |||||| ||||| | | ||||| || Sbjct 57110 CACAGGCAAAGCCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCATTG---ATAATTAT 57054 Query 13611 CTTA-ATAATGTCA--TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13667 | ||| | || | || || | | ||| ||||| || || | || ||||| Sbjct 57053 TTCGCATACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATCAGGCAAGCAAA 56994 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727 |||||| || | ||||||||||| ||||||||||| || |||||||| | || ||||| Sbjct 56993 ATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCAT 56934 Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 13787 || ||||||||| || | ||| ||||| | || || || || |||||||| || || || Sbjct 56933 CAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTC 56874 Query 13788 AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTT 13847 ||||||||||| |||| | ||||| ||| | | || | ||||| ||||| Sbjct 56873 CACTGCAGCAAAGGCTACGCG-CGTTCACCATAGGTAGCCTGTTTGTCCCCAATCCAGCG 56815 Query 13848 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATG 13907 ||||| || || || || | | || ||| ||||| || |||||||| | | Sbjct 56814 CAAGGCCCAATCTGA---CTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAA 56758 Query 13908 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 13967 |||| | || || | | | ||||| || |||||||| | |||||||||||||| || Sbjct 56757 TTCCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATG 56698 Query 13968 TATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027 ||||||||| || || || || |||||||| ||||| | ||||||| || || || Sbjct 56697 TATGTTTTCCATGGCAATTTGGAAACCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 56638 Query 14028 CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGC 14087 || ||||| || ||||||||||||| || || ||||||| |||||||| || || Sbjct 56637 TTGGTTAAATCGCTCCACCAAGTTTTCATTTACTATGTCATCACTTGCTGCAAATAAAGC 56578 Query 14088 CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAA-- 14145 || | || ||||||||| ||| || || || || ||| | || ||| Sbjct 56577 CAGAACGTGGGATATAAAGTATCTCTCCTCGGGCTTCAGGGATTCCCAGT--GCCAAATG 56520 Query 14146 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACAT 14204 ||||| || || || || || || | ||||| || || | || || |||||||| Sbjct 56519 TCCTTGGACAGCTCCACCTCCTCGGCGGTCCAGAAGGAGGCCTCCGCCTTCTTATACAT 56461 >seq23499 Length=2348749 Score = 275 bits (304), Expect = 6e-69 Identities = 532/780 (68%), Gaps = 4/780 (1%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTG-TTAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | || || || || ||||| | Sbjct 2215563 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGATTTGACATCACTCCCATCCT 2215621 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| |||| ||||| | ||||| |||||||| || ||||||||||| ||||| || Sbjct 2215622 CTGATACTCACCTACTCTCGTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 2215681 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 |||||| || |||||||| | | || || || | |||| ||||| | | | Sbjct 2215682 CATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATAAG 2215741 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 ||| || || | |||| |||| | ||| ||||| | || ||||| || | || || Sbjct 2215742 TCTGTCTGCCACAAACCCAATGTGTTGCTTCATTAGAGTGCAGTTCATCCCAGTGAGCTT 2215801 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA- 13609 ||||| | | ||| | || || | |||| ||||| | | | || || Sbjct 2215802 CACAGGCAAGGCCTCAGTGAGGAACTCCTGCTCTAACCGAACAGCATTGATAATTATTTC 2215861 Query 13610 TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 13669 ||||| | || | || || | | | | ||||| || || | || ||||||| Sbjct 2215862 TCTTACCC-TCTCCTCTGATGGTTTGTGTACTGGGTGTTTGAACATCAGGCAAGCAAAAT 2215920 Query 13670 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13729 |||| || | ||||||||||| ||||||||||| || |||||||| | || ||||||| Sbjct 2215921 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCA 2215980 Query 13730 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 13789 ||||||||| || | ||| ||||| | || || || || |||||||| || || || | Sbjct 2215981 GTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAAATGCCTTCCA 2216040 Query 13790 CTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTC 13849 |||||||||| |||| | ||||| ||| | | | | ||||| |||| | Sbjct 2216041 CTGCAGCAAAGGCTACGACACGTTCACCATAGGTAACCTCTTTGTCCCCAGTCCAGTGCA 2216100 Query 13850 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTT 13909 ||||| || | || || || | | || ||| ||||| | |||||||| | | || Sbjct 2216101 AGGCCCAGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAACGGCATTGAAGAGAAATT 2216160 Query 13910 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 13969 || | || | | | | ||||| || |||||||| | |||||||||||||| |||| Sbjct 2216161 CCCTTTCGCTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 2216220 Query 13970 TGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCG 14029 ||||||| | || || || || ||||| ||||| | ||||||| || ||||| Sbjct 2216221 TGTTTTCCCTGGCAATTTGGAATCCATAGAAACAGCGGGCTTCTGTAATCTGAACCTCTT 2216280 Query 14030 AGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCA 14089 | ||||| || ||||||||||||| || || || | ||| |||||||| || |||| Sbjct 2216281 GGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCCTTACTCGCTGCAAAGAAAGCCA 2216340 >seq22719 Length=8987742 Score = 260 bits (288), Expect = 1e-64 Identities = 527/780 (68%), Gaps = 24/780 (3%) Strand=Plus/Minus Query 13315 AAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTTTTG 13373 || ||| |||| || | |||| ||| || | || | | || || || ||||| | || Sbjct 8555348 AAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCTCTG 8555290 Query 13374 ATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13433 ||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| ||||| Sbjct 8555289 ATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTCCAT 8555230 Query 13434 AAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCT 13493 ||| | |||||||| | | || || || | |||| ||||| | | | ||| Sbjct 8555229 AAAGGCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATAAGTCT 8555170 Query 13494 ATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTAC 13553 || || | ||||||||| ||||| ||||| | |||||||| || || || || || Sbjct 8555169 GTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCAC 8555110 Query 13554 AGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT--- 13610 ||| | | ||| | || || | |||||| ||||| | | ||||| || Sbjct 8555109 AGGCAAGGCCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCAT---TCATAATTATTTC 8555053 Query 13611 -CTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 13669 |||| | | || | || || | | || ||||| || || | || ||||||| Sbjct 8555052 TCTTACTC-TCTCCTCTGATGGTTTGTGTACTATGTGTTTGAACATCAGGCAAGCAAAAT 8554994 Query 13670 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13729 |||| || | ||||||||||| ||||||||||| || |||||||| | || ||||||| Sbjct 8554993 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCA 8554934 Query 13730 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 13789 ||||||||| || | ||| ||||| | || || || || |||||||| || || || | Sbjct 8554933 GTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCA 8554874 Query 13790 CTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTC 13849 |||||||||| |||| | ||||| ||| | | || | ||||| ||||| Sbjct 8554873 CTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCA 8554814 Query 13850 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTT 13909 ||||| || | || || | | | || ||| ||||| || |||||||| | | || Sbjct 8554813 AGGCCCAATCTGCCTTCTTCTGGACACAAGGCATCGTTTCAATGGCATTGAAAAGAAATT 8554754 Query 13910 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 13969 || | || || | | | ||| | || |||||||| || |||||||||||||| |||| Sbjct 8554753 CCCTTTCGTTGGGATCTTTTATGCAAGTGTCAATAAGGAAACTATACATTTCAGAATGTA 8554694 Query 13970 TGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCG 14029 ||||||| || || || |||| | | ||||| || || || Sbjct 8554693 TGTTTTCCATGGC--------------AATAACAGCGGGTTTCTGTAATCTGAACTTCTT 8554648 Query 14030 AGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCA 14089 | |||| || ||||||||||||| || || ||||||| |||||||| || |||| Sbjct 8554647 GGCTAAATTGCTCCACCAAGTTTTCATTTACTATGTCATCACTTGCTGCAAAGAAAGCCA 8554588 >seq27380 Length=10165399 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 7666511 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 7666570 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || || |||||||| || || || ||||||||||| | Sbjct 7666571 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 7666630 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | ||||| || Sbjct 7666631 CTACGACCCGTTCACC 7666646 Score = 89.7 bits (98), Expect = 5e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 7664671 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 7664729 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct 7664730 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 7664789 Query 13431 CATAAAATCGAATGGATT 13448 |||||| || |||||||| Sbjct 7664790 CATAAAGTCAAATGGATT 7664807 Score = 82.4 bits (90), Expect = 7e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 ||||| || |||||||| | |||||||||||||| ||||||||||| || || || || Sbjct 7668628 ATGTAAGTGTCAATAAGCAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 7668687 Query 13990 AAACCATAAAAACATCTAGCTTCTG 14014 || ||||| ||||| | ||||||| Sbjct 7668688 AAGCCATAGAAACAGCGGGCTTCTG 7668712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478415778184080