Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq12132 178 2e-39 seq12486 168 1e-36 seq22719 145 1e-29 seq19633 91.5 2e-13 >seq12132 Length=2475592 Score = 178 bits (196), Expect = 2e-39 Identities = 571/876 (65%), Gaps = 24/876 (3%) Strand=Plus/Plus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 || ||| || ||| || | || ||| | ||||| || ||||| |||||||||| ||| Sbjct 56431 TTCCCCGTCGAGTACCACGGTATCTGGCACATGTATAAGAAGGCGGAGGCCTCCTTCTGG 56490 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | ||| ||||| || |||||||||||| | | | ||||| | | | | || Sbjct 56491 ACCGCCGAGGAGGTGGAGCTGTCCAAGGACATTTGGCACTGGGAATCCCTGAAGCCCGAG 56550 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 ||| || | |||||||| ||| || |||| || ||||| | |||| || || Sbjct 56551 ---GAGAGATACTTTATATCCCACGTTCTGGCTTTATTTGCAGCAAGTGATGACATAGTA 56607 Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGCTT 125236 || || || || || ||||| ||||| ||| | ||| |||| | || || Sbjct 56608 AATGAAAACTTGGTGGAGCGATTTAACCAAGAAGTTCAG-ATTACAGAAGCCCGCTGTTT 56666 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 || || |||||||| || || ||| | || || |||||||| | || ||||| Sbjct 56667 CTATGGTTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGA 56726 Query 125297 CATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGC 125355 || ||||| ||||| ||||| || || ||||| || || || || ||| ||| Sbjct 56727 CACTTACATAAAAGATCC-CAACGAAAGGGAATTTCTCTTCAATGCCATTGAAACGATGC 56785 Query 125356 CGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGT 125415 | | | | || ||| | | |||| | || ||||| | ||| | || || | | Sbjct 56786 CTTGTGTC---AAGAAGTCAGATTGGGCCTTGCGCTGGATTGGGGACAAACAGGCTACCT 56842 Query 125416 ACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTG 125475 | | || | | || || || || || || || |||||||||||||| ||| ||||| Sbjct 56843 ATGGTGAACG-CGCGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTG 56901 Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGT 125535 | |||| || ||||||||||| || ||||| ||||| || || || ||| || Sbjct 56902 CATCCATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAAC 56961 Query 125536 TTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATC 125595 |||| |||| ||||| |||||||||| ||||| || |||| ||| | Sbjct 56962 TTATTAGCAGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGTT---CAAACA-- 57016 Query 125596 TGCGTCCCGAGTGCA-GATCCAGC-GATGAAAAGGTCATCAACATTGTAACCGATGCCGT 125653 || ||| || | ||| | || || | || | | || | | | |||| || Sbjct 57017 ------CCTAGTACACAAACCATCAGAGGAGAGAGTATGCGAAATAATTATCAATGCTGT 57070 Query 125654 GAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTG 125713 |||||||||| ||||| || || || | | || || | | ||||| |||||||| Sbjct 57071 TCGGATAGAACAGGAGTTCCTCACTGAGGCTTTGCCTGTGAAGCTCATTGGGATGAACTG 57130 Query 125714 CAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGG 125773 || |||||| | ||||| ||||||||||||| | || || || || | Sbjct 57131 CACTCTAATGAAGCAATACATTGAGTTTGTGGCAGGCAGACTTATGCTGGAACTGGGTTT 57190 Query 125774 CCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGG 125833 ||||| ||| || | ||||||| ||||| || ||| | || ||||| || || Sbjct 57191 TAGCAAGGTTTTCAGAGTAGAGAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGG 57250 Query 125834 TAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 |||| ||||| || ||||||| || ||||||| Sbjct 57251 ATAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTA 57286 >seq12486 Length=6174982 Score = 168 bits (186), Expect = 1e-36 Identities = 463/702 (66%), Gaps = 8/702 (1%) Strand=Plus/Minus Query 69926 AAGGGCGTCATCGAGGAGCTCTTGTGGATGATTTCCGGATCGACCAATGCCAAAGAGCTG 69985 ||||| || | |||||| | |||||| | || ||||| || ||||| |||||||| Sbjct 2654877 AAGGGTGTTTTGGAGGAGTTGTTGTGGTTTATCAAGGGATCCACAAATGCTGAAGAGCTG 2654818 Query 69986 AGCCGAAAGGGTGTACACATTTGGAGCGGCAACAGTAGTCGAAGCGTTT-TGGATTCGCT 70044 ||||| || | || ||| | ||| | | | ||| ||| ||||| | Sbjct 2654817 CCTTCCAAGGGAGTGAAAATCTGGGATGCCAATGG-ATACCAAGACTTTCTGGATAGCTT 2654759 Query 70045 CGGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCA 70104 || ||| ||| |||| |||| || || |||| ||||| || || ||||| |||||||| Sbjct 2654758 GGGATTCTCCGCCAGAGAAGAAGGGGACTTGGGCCCAGTTTATGGCTTCCAATGGAGGCA 2654699 Query 70105 CTCGGGCACCAAGTATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT 70164 | || | || || ||| || |||| ||||| || | || ||||| ||| | Sbjct 2654698 TTTTGGGGC--AGAATAGAGATATGGATTCAGATTATTCAGGAAAAGGAGTTGACCAACT 2654641 Query 70165 GCAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTC 70224 ||| | | | |||||||| |||| ||||| || || || || ||| | | |||| | Sbjct 2654640 GCAAAGAGTGATTGACACCATCAAAACCAACCCTGATGACAGAAGAATCATCACGTGCAC 2654581 Query 70225 ATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGT--TTGGCTCAG 70282 |||||||| |||| | | | ||||| || || || || || || | || ||| Sbjct 2654580 TTGGAATCCAAGAGATCTTCCTCTGATGGCGCTGCCTCCATGCCA-TGCCCTCTGC-CAG 2654523 Query 70283 TTTTACTCGTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGC 70342 || || | |||| | |||| ||| |||| ||| | | ||||| ||| Sbjct 2654522 TTCTAAGTGGTGAATGGTGAGCTGTCCTGCCAGCTGTACCAGCGATCGGGAGACATCGGC 2654463 Query 70343 CTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATT 70402 || ||||| || || ||||| || ||||| | || | | | ||||||| || ||||| Sbjct 2654462 CTAGGTGTGCCTTTCAACATCGCCAGCTAGGCCCTGCTCATGTACATGATCGCGCACATC 2654403 Query 70403 ACCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAAT 70462 || |||||||| || || || ||||| || | || || || || | || | ||| Sbjct 2654402 ACGGGCCTGAAGCCGGGTGACTTTGTACATACTTTGGGAGATGCACATATTTACCTGAAT 2654343 Query 70463 CACATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAG 70522 |||||||||||| | || | || || | || || || |||||||| || || || || Sbjct 2654342 CACATCGAGCCACTGAAAATTCAGCTTCAGCGAGAACCCAGACCTTTCCCAAAACTCAAG 2654283 Query 70523 TTTGCTCGTAAAGTTGAAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGT 70582 || ||| |||||||| || ||||| || || ||||| |||| | |||| Sbjct 2654282 ATTCTTCGAAAAGTTGAGAAAATTGATGACTTCAAAACTGAAGACTTTAAGGTTGAAGGG 2654223 Query 70583 TACGATCCATACCCTAAGATTCCCATGGTTCTGGCTGTTTAG 70624 ||| ||||| | || ||| |||| ||||||||||| Sbjct 2654222 TACAATCCACATCCAGCTATTAAAATGGAAATGGCTGTTTAG 2654181 Score = 105 bits (116), Expect = 1e-17 Identities = 251/376 (67%), Gaps = 4/376 (1%) Strand=Plus/Minus Query 69896 CCTCTGTTGACGACC-AAGA-CTGTCTTTGTCAAGGGCGTCATCGAGGAGCTCTTGTGGA 69953 |||||| |||| ||| || | |||| | | ||||| || | |||||| | ||||| Sbjct 332416 CCTCTGCTGACAACCGAACATCTGTTCTGG--AAGGGTGTTTTGGAGGAGTTGCTGTGGT 332359 Query 69954 TGATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGAAAGGGTGTACACATTTGGAGCG 70013 | || ||||| || ||||| ||||||||| ||||| || | || ||| | Sbjct 332358 TTATCAAGGGATCCACAAATGCTAAAGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGATG 332299 Query 70014 GCAACAGTAGTCGAAGCGTTTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATC 70073 ||| | ||| | || ||||| | || ||| ||| |||| |||| || || Sbjct 332298 CCAATGGATCCCGAGACTTTCTGGATAGCTTGGGATTCTCCGCCAGAGAAGAAGGGGACT 332239 Query 70074 TGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGAGA 70133 |||| ||||| || || |||||||||||||| | || | | || ||| || Sbjct 332238 TGGGCCCAGTTTATGGCTTCCAGTGGAGGCATTTTGGGGCAGAATACAGAGATATGGATT 332179 Query 70134 CAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTCAAGACCA 70193 |||| ||||| || || || ||||| ||| |||| | | | |||||||| |||| |||| Sbjct 332178 CAGATTATTCAGGACAAGGAGTTGACCAACTGCAAAGAGTGATTGACACCATCAAAACCA 332119 Query 70194 ATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGG 70253 | || || || || ||| | |||||| | |||||||| |||| | | | |||| Sbjct 332118 ACCCTGATGACAGAAGAATCATCATGTGCGCTTGGAATCCAAGAGATCTTCCTCTGATGG 332059 Query 70254 CACTACCACCGTGTCA 70269 | || || || || || Sbjct 332058 CGCTGCCTCCATGCCA 332043 >seq22719 Length=8987742 Score = 145 bits (160), Expect = 1e-29 Identities = 564/876 (64%), Gaps = 34/876 (4%) Strand=Plus/Plus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 || |||||| ||| || | || ||| | ||||| || ||||| |||||||||| ||| Sbjct 8554443 TTCCCCATCGAGTACCACAATATCTGGCAGATGTATAAGAAGGCGGAGGCCTCCTTCTGG 8554502 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | ||| ||||| || |||| ||||||| | | ||||| | | ||| Sbjct 8554503 ACCGCCGAGGAGGTGGACCTGTTCAAGGACATTCGGCACTGGGAATCCC---TGAAGCCC 8554559 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 | ||| || | |||||||| ||| || |||| |||||||| | |||| || || Sbjct 8554560 AAGGAGAGATACTTTATATCCCACGTTCTGGCTTTCTTTGCAGCAAGTGATGACATAGTA 8554619 Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGCTT 125236 || || || || || | ||| ||||| ||| | ||| |||| | ||| Sbjct 8554620 AATGAAAACTTGGTGGAGCAATTTAGCCAAGAAGTTCAG-ATTACAGAAA---CCCGCTG 8554675 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 ||| || | |||| || ||| | || || |||||||| | || ||||| Sbjct 8554676 TTA----TTGC----CATG---GAAAACATACATTCTGAAATGTATAGTTTCCTTATTGA 8554724 Query 125297 CATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGC 125355 || | ||| ||||| ||||| || || || || || || || || ||| ||| Sbjct 8554725 CACTTGCATAAAAGATCC-CAACGAAAGGGAATTTCTTTTCAATGCCATTGAAACGATGC 8554783 Query 125356 CGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGT 125415 | | | | | || ||||| | |||| | || ||||| | ||| | || || | | Sbjct 8554784 CTTGTGTCCAGAAGAAGGCAGATTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCTACCT 8554843 Query 125416 ACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTG 125475 | | || | | || || || || || || || |||||||||||||| ||| ||||| Sbjct 8554844 ATGGTGAACGCGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTG 8554903 Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGT 125535 | |||| || ||||||||||| || ||||| ||||| || || || ||| || Sbjct 8554904 CATCCATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAAC 8554963 Query 125536 TTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATC 125595 |||| |||| ||||| |||||||||| ||||| || |||| ||| | Sbjct 8554964 TTATTAGCAGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGTT---CAAACA-- 8555018 Query 125596 TGCGTCCCGAGTGCA-GATCCAGC-GATGAAAAGGTCATCAACATTGTAACCGATGCCGT 125653 | ||| || | ||| | || || | || | | || | | |||| || Sbjct 8555019 ------CATAGTACACAAACCATCAGAGGAGAGAGTAAGAGAAATAATTATGAATGCTGT 8555072 Query 125654 GAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTG 125713 |||||||||| ||||| || || || || | || || | | ||||| ||||| || Sbjct 8555073 TCGGATAGAACAGGAGTTCCTCACTGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTG 8555132 Query 125714 CAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGG 125773 || |||||| | ||||| |||||||||||||| | || || || || | Sbjct 8555133 CACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATGCTGGAACTGGGTTT 8555192 Query 125774 CCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGG 125833 ||||| ||| || | ||||||| |||| || ||| | || ||||| || || Sbjct 8555193 TAGCAAGGTTTTCAGAGTAGAGAATCCATTTGCCTTTATGGAGAATATTTCACTGGAAGG 8555252 Query 125834 TAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 ||||| ||||| || ||||||| || ||||||| Sbjct 8555253 AAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTA 8555288 >seq19633 Length=3468624 Score = 91.5 bits (100), Expect = 2e-13 Identities = 229/341 (67%), Gaps = 13/341 (4%) Strand=Plus/Plus Query 69896 CCTCTGTTGACGACCAAGACTGTCT-TTGTC-AAGGGCGTCATCGAGGAGCTCTTGTGGA 69953 |||||| |||| ||||| ||||| || | ||||| || | ||||| | ||||| Sbjct 1959687 CCTCTGCTGACAACCAAA--TGTCTGTTCTGGAAGGGTGTTTTGGAGGAATTGCTGTGGT 1959744 Query 69954 TGATTTCCGGATCGACCAATGCCAAAGAGCTG--AGCCGAAAGGGTGTACACATTTGGAG 70011 | || ||||| || ||||| ||||||||| | || ||||| || | || ||| Sbjct 1959745 TTATCAAGGGATCCACAAATGCTAAAGAGCTGTCATCC--AAGGGAGTGAAAATCTGGGA 1959802 Query 70012 CGGCAACAGTAGTCGAAGCGTTTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGA 70071 | ||| | || | || ||||| | || ||| ||| |||| ||| || | Sbjct 1959803 TGCCAATGGATCCTGAGACTTTCTGGATAGCTTGGGATTCTCCGCCAGAGAAGGGGACT- 1959861 Query 70072 TCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGA 70131 |||| ||||| || || |||||||||||||| | || | || || ||| || Sbjct 1959862 --TGGGCCCAGTTTATGGCTTCCAGTGGAGGCATTTTGGGGC--AGAATACAGAGATGGA 1959917 Query 70132 GACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTCAAGAC 70191 |||| ||||| || || || ||||| ||| |||| | | | |||||||| |||| || Sbjct 1959918 TTCAGATTATTCAGGACAAGGAGTTGACCAACTGCAAAGAGTGATTGACACCATCAAAAC 1959977 Query 70192 CAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATC 70232 ||| || || || || ||| | |||||| | ||||||| Sbjct 1959978 CAACCCTGATGACAGAAGAATCATCATGTGCACTTGGAATC 1960018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740791288572720