Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq26070 102 6e-17 seq24834 98.7 7e-16 seq16297 98.7 7e-16 seq23666 91.5 1e-13 seq13033 89.7 4e-13 seq15423 87.8 1e-12 seq19202 86.0 5e-12 seq20631 84.2 2e-11 seq15807 84.2 2e-11 seq18140 82.4 6e-11 >seq26070 Length=4351986 Score = 102 bits (112), Expect = 6e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||| || || | |||||| || || || || || |||||||| || ||| | | | Sbjct 512814 TCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAGAGTACGTCC 512755 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 |||||| | ||| |||||||| | |||| | ||| || || ||||||||||| || Sbjct 512754 GTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 512695 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || || ||| ||||||| ||||||| ||||| ||| || || | ||| || Sbjct 512694 ATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTCAACCTCGAGGGTGAT 512635 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||| || ||||| || ||||| || ||||| ||||| || Sbjct 512634 GGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTT 512596 >seq24834 Length=2526834 Score = 98.7 bits (108), Expect = 7e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||| || || | |||||| ||||| || ||||| |||||||| || ||| | | | Sbjct 598469 TCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCC 598528 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||| | ||| |||||||| | |||| | ||| || || ||||||||||| || Sbjct 598529 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 598588 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || || ||| ||||||| ||||| | ||||| ||| || || | ||| || Sbjct 598589 ATCCTGGATCTTGGCCTTTACATTTTCTGTCGTATCCGAGGGTTCAACCTCAAGGGTGAT 598648 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||| || || || || ||||| || ||||| ||||| || Sbjct 598649 GGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 598687 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||| || || | |||||| ||||| || ||||| |||||||| || ||| | | | Sbjct 2359065 TCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCC 2359006 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||| | ||| |||||||| | |||| | |||||| || ||||||||||| || Sbjct 2359005 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGTTGATCAGGAGGAATTCCTTCCTT 2358946 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 | || || ||||||| ||||||| ||||| ||| || | | ||| || Sbjct 2358945 AACCTGGATCTTAGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTTGAGGGTGAT 2358886 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||| || || | || ||||| |||||| | ||||| || Sbjct 2358885 GGTCTTCCCCTTAAGGGTTTTCACAAAACTCTGCATTTT 2358847 >seq16297 Length=2103431 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | |||||| || || || ||| | |||||||| || Sbjct 675308 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTCGAATGTTGTAGTCAGAC 675249 Query 15197 AGAATTC-TCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 ||| | | ||| |||||| | ||| |||||||| | ||||| | ||| || || || Sbjct 675248 AGAGTACGTCG-GTCTTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAGG 675190 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||| || || || ||| ||||||| ||||||| ||||| ||| || Sbjct 675189 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGATTCAAC 675130 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 | | ||| ||||| || ||||| || ||||| | ||||| ||||| || Sbjct 675129 CTTGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCATGAAAATCTGCATTTT 675079 >seq23666 Length=5806929 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | |||||| || || || || || |||||||| || Sbjct 828674 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 828733 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | ||| |||||||| | |||| | ||| || || ||| Sbjct 828734 AGAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGGTGATCAGGAGGA 828793 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||||||| ||||||| |||| ||| || Sbjct 828794 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCAACT 828853 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 | | ||| ||||| || ||||| || ||||| || ||||| ||||| || Sbjct 828854 TTGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTT 828903 >seq13033 Length=3880709 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||||| || | | || | || |||||||| ||||| || |||||||| || Sbjct 3665181 TGCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTG 3665240 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | | || || | ||||||||||| |||||| ||| || ||||| || Sbjct 3665241 AGAGCGTGCGGCCATCCTCCAGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTG 3665300 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || || || ||||| ||||||| || ||| | || ||||| || || || | Sbjct 3665301 GGATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 3665360 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||| ||||| || || || || || || ||||| || ||||| Sbjct 3665361 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 3665409 >seq15423 Length=9779632 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| | ||| |||||||| | |||| | ||| || || ||||||||||| || Sbjct 6864502 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTA 6864443 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || |||||| ||||||| |||||| ||||| ||| || || | |||||| Sbjct 6864442 TCCTGGATTTTGGCCTTTACATTTTCTAACGTATCCGAGGGTTCAACTTCGAGGGTAATA 6864383 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || || || |||||||| |||||||| ||||| || Sbjct 6864382 GTCTTCCCCGTAAGAGTTTTCACAAAAATCTGCATTTT 6864345 >seq19202 Length=12282305 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | |||||| || || || || || |||||||| || Sbjct 12257038 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 12257097 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | ||| |||||||| | |||| | ||| || || ||| Sbjct 12257098 AAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGGCTTTGCTGATCAGGAGGA 12257157 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||||||| ||||||| ||||| ||| ||| Sbjct 12257158 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACA 12257217 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 | | ||| ||||| || || || || ||||| | ||||| ||||| || Sbjct 12257218 TTGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCATGAAAATCTGCATTTT 12257267 >seq20631 Length=3741062 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||| || || | |||||| || || || ||||| |||||||| || ||| | | | Sbjct 1078077 TCTCAACACCAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGAGTACGTCC 1078018 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||||| ||| |||||||| || |||| | ||| || || ||||||||||| || Sbjct 1078017 ATCTTCTAGTTGCTTGCCAGCATAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 1077958 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || || ||| |||||| ||||| | ||||| ||| || | | ||| || Sbjct 1077957 ATCCTGGATCTTGGCCTTTACGTTTTCTTTCGTATCTGAGGGTTCAACCTGGAGGGTGAT 1077898 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || | || |||||||| | ||||| ||||| || Sbjct 1077897 AGTCTTCTCCGTAAGAGTTTTCATGAAAATCTGCATTTT 1077859 >seq15807 Length=9314881 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||| || || | |||||| | || || ||||| |||||||| || | | | | | Sbjct 6716641 TCTCAACACAAGATGAAGAATAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCC 6716582 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||| | ||| |||| ||| | |||| | ||| || || ||||||||||| || Sbjct 6716581 ATCTTCCAGTTGCTTGCTAGCAAAGATCAGTCTTTGCTGATCAGAAGGAATTCCTTCCTT 6716522 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || || ||| ||||||| ||||||| ||||| | || || || | ||| || Sbjct 6716521 ATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAAGGCTCAACCTCGAGGGTGAT 6716462 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||| || || | || ||||| |||||||| ||||| || Sbjct 6716461 GGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCATTTT 6716423 >seq18140 Length=5205659 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || || | |||||| || || || || || |||||||| || Sbjct 3938579 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 3938638 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| ||| ||||||| | |||| | ||| || || ||| Sbjct 3938639 AAAGTACGTCCATCTTCCGGTTGCTTGCCAGTAAAGATCAGTCTTTGCTGATCAGGAGGA 3938698 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||||||| ||||||| ||||| ||| || Sbjct 3938699 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 3938758 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | ||| ||||| || || || || ||||| || ||||| ||||| || Sbjct 3938759 TCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCATTTT 3938808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362051536585602