Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq12132 322 4e-83 seq23499 284 1e-71 seq22719 273 2e-68 seq18140 96.9 3e-15 seq24714 86.0 5e-12 >seq12132 Length=2475592 Score = 322 bits (356), Expect = 4e-83 Identities = 591/862 (69%), Gaps = 22/862 (3%) Strand=Plus/Minus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||| || ||| | ||||| |||| ||||| || ||||| ||||| || | || Sbjct 57309 TTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTATC 57250 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTT 12958 |||| | |||||||| |||||||| || || ||||| | || | || || Sbjct 57249 CTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACC----TTG 57194 Query 12959 TTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAA 13018 || | || | ||| || | | |||| | || |||||||| ||||| || ||||||| | Sbjct 57193 CTAAAACCCAGTTCCAGCATAAGTCTGCCTGCCACAAACTCAATGTATTGCTTCATTAGA 57134 Query 13019 TCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATA 13078 |||||||| || || | || ||||||| ||| || || | || | | |||||| Sbjct 57133 GTGCAGTTCATCCCAATGAGCTTCACAGGCAAAGCCTCAGTGAGGAACTCCTGTTCTATC 57074 Query 13079 TCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGC 13138 ||| || | ||||| ||| || | || | | |||| |||| | | ||| || Sbjct 57073 CGAACAGCATTGATAATTATTTCGCATACTCTCTCCTCTGATGGTTTGTGTACTAGGTGT 57014 Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTT 13198 || ||||||| || |||||||||||||| || || |||||||| || || || || || Sbjct 57013 TTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTA 56954 Query 13199 GAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAA 13258 |||||||| || || ||||| || |||||||| || | ||| ||||| | ||||| ||| Sbjct 56953 GAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAA 56894 Query 13259 CCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTA 13318 || ||||| || || ||||| ||||| ||||| |||| | | ||||||||| ||| Sbjct 56893 CCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTA-CGCGCGTTCACCATAGGTAGCC 56835 Query 13319 TTTTTACTCTCTATCCACTTTCTGGCCCAGTTTG-CTTTTTGTTTAACGCAGTTCATATT 13377 | ||| | | ||||| |||||| | || ||| ||| || || ||| | Sbjct 56834 TGTTTGTCCCCAATCCAGCGCAAGGCCCAATCTGACTTCTTG----ACACAAGGCATCGT 56779 Query 13378 TTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAA 13437 ||| || || || || | | | | |||| || ||| || ||||| || || | Sbjct 56778 TTCAATGGCATTGAAGAGAAATTCCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAG 56719 Query 13438 TAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCT 13497 | ||||||||||| ||||| || |||||||| || |||||||||||||| ||||| | Sbjct 56718 GAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAACCATAGAAACAGCG 56659 Query 13498 AGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCC 13557 || |||| | ||||||||| || ||||| || | |||||||| || ||||| | Sbjct 56658 GGCTTCTGTAATCTGAACTTCTTGGTTAAATCGCTCCACCAAGTTTTCATTTACTATGTC 56599 Query 13558 GTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC----GTTTTCTG 13613 ||||| || ||||| ||||| || | ||| ||||| | | | || | ||| | Sbjct 56598 ATCACTTGCTGCAAATAAAGCCAGAACGTGGGATATAAAGTATCTCTCCTCGGGCTTCAG 56539 Query 13614 ACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAG 13673 | | ||| | || || || || | || |||||||| ||||||| || | Sbjct 56538 GGA----TTCCCAGTGCCAAATGTCCTTGGACAGCTCCACCTCCTCGGCGGTCCAGAAGG 56483 Query 13674 AAGCAACAGCCTTCTTATACAT 13695 | || | |||||||||||||| Sbjct 56482 AGGCCTCCGCCTTCTTATACAT 56461 >seq23499 Length=2348749 Score = 284 bits (314), Expect = 1e-71 Identities = 514/751 (68%), Gaps = 8/751 (1%) Strand=Plus/Plus Query 12841 ATTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTT 12900 ||||||||| || ||| | ||||| || | ||||| | ||||| ||||| || || Sbjct 2215601 ATTTGACATCACTCCCATCCTCTGATACTCACCTACTCTCGTCTCAAAGAAGTTAGTCTT 2215660 Query 12901 TCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATT 12956 |||||| | |||||||| |||||||| || || ||||| | || | || | Sbjct 2215661 TCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACC----T 2215716 Query 12957 TTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTA 13016 | || | || | ||| || | | |||||| || |||||| | |||| || ||||||| Sbjct 2215717 TGCTAAAACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACCCAATGTGTTGCTTCATTA 2215776 Query 13017 AATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTA 13076 | |||||||| || | | || ||||||| || || || | || | | |||| Sbjct 2215777 GAGTGCAGTTCATCCCAGTGAGCTTCACAGGCAAGGCCTCAGTGAGGAACTCCTGCTCTA 2215836 Query 13077 TATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGAT 13136 ||| || | ||||| ||| ||||||| | |||| |||| | | | | | Sbjct 2215837 ACCGAACAGCATTGATAATTATTTCTCTTACCCTCTCCTCTGATGGTTTGTGTACTGGGT 2215896 Query 13137 GCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGT 13196 | || ||||||| || |||||||||||||| || || |||||||| || || || || | Sbjct 2215897 GTTTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCAT 2215956 Query 13197 TTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACG 13256 | |||||||| || || ||||| || |||||||| || | ||| ||||| | ||||| | Sbjct 2215957 TAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAG 2216016 Query 13257 AACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTAC 13316 |||| ||||| || || ||||| ||||| ||||| |||| | | ||||||||| ||| Sbjct 2216017 AACCAGAAAAGAAAATGCCTTCCACTGCAGCAAAGGCTACGACACGTTCACCATAGGTAA 2216076 Query 13317 TATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATAT 13376 | ||| | | |||| | |||||||| ||| || | || || || ||| Sbjct 2216077 CCTCTTTGTCCCCAGTCCAGTGCAAGGCCCAGTCTGCCTTCTTCTTGACACAAGGCATCG 2216136 Query 13377 TTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCA 13436 |||| | || || || | | | | |||| | ||| || ||||| || || | Sbjct 2216137 TTTCAACGGCATTGAAGAGAAATTCCCTTTCGCTGGGATCTTTTATGTAAGTGTCAATAA 2216196 Query 13437 ATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATC 13496 | ||||||||||| ||||| || |||||| | || |||||||| ||||| ||||| | Sbjct 2216197 GGAGACTATACATTTCAGAATGTATGTTTTCCCTGGCAATTTGGAATCCATAGAAACAGC 2216256 Query 13497 TAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCC 13556 || |||| | |||||| || | ||||| || | |||||||| || ||||| | Sbjct 2216257 GGGCTTCTGTAATCTGAACCTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGC 2216316 Query 13557 CGTCACTAGCAGCaaaaaaaGCAAGTATGTG 13587 | | ||| || ||||| ||||| || | ||| Sbjct 2216317 CCTTACTCGCTGCAAAGAAAGCCAGAACGTG 2216347 >seq22719 Length=8987742 Score = 273 bits (302), Expect = 2e-68 Identities = 585/873 (67%), Gaps = 32/873 (4%) Strand=Plus/Minus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||| || ||| | ||||| |||| ||||| || ||||| ||||| || |||| Sbjct 8555311 TTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTC 8555252 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTT 12958 |||| | |||||||| |||||||| | || ||||| | || | || || Sbjct 8555251 CTTCCAGTGAAATATTCTCCATAAAGGCAAATGGATTCTCTACTCTGAAAACC----TTG 8555196 Query 12959 TTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAA 13018 || | || | ||| || | | |||||| || |||||||| ||||| || ||||||| | Sbjct 8555195 CTAAAACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGA 8555136 Query 13019 TCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATA 13078 || ||||| || || | || ||||||| || || || | || | | |||||| Sbjct 8555135 GTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAACTCCTGTTCTATC 8555076 Query 13079 TCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGC 13138 ||| || | |||| ||| ||||||| | | |||| |||| | | || || Sbjct 8555075 CGAACAGCATTCATAATTATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTATGTGT 8555016 Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTT 13198 || ||||||| || |||||||||||||| || || |||||||| || || || || || Sbjct 8555015 TTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTA 8554956 Query 13199 GAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAA 13258 |||||||| || || ||||| || |||||||| || | ||| ||||| | ||||| ||| Sbjct 8554955 GAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAA 8554896 Query 13259 CCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAAC-CTTTCACCATACGTACT 13317 || ||||| || || ||||| ||||| ||||| |||| |||| | ||||||||| ||| Sbjct 8554895 CCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTA-CAACGCGTTCACCATAGGTAGC 8554837 Query 13318 ATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATT 13377 | ||| | | ||||| |||||| | ||| || | | || || ||| | Sbjct 8554836 CTCTTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTGGACACAAGGCATCGT 8554777 Query 13378 TTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAA 13437 ||| || || || || | | | | |||| || ||| || |||| || || | Sbjct 8554776 TTCAATGGCATTGAAAAGAAATTCCCTTTCGTTGGGATCTTTTATGCAAGTGTCAATAAG 8554717 Query 13438 TAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCT 13497 || ||||||||||| ||||| || |||||||| || || |||| | Sbjct 8554716 GAAACTATACATTTCAGAATGTATGTTTTCCATGGC--------------AATAACAGCG 8554671 Query 13498 AGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCC 13557 | |||| | ||||||||| | |||| || | |||||||| || ||||| | Sbjct 8554670 GGTTTCTGTAATCTGAACTTCTTGGCTAAATTGCTCCACCAAGTTTTCATTTACTATGTC 8554611 Query 13558 GTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTT----TTCTG 13613 ||||| || ||||| ||||| || | ||| ||||| | | | || || ||| | Sbjct 8554610 ATCACTTGCTGCAAAGAAAGCCAGAACGTGGGATATAAAGTATCTCTCCTTGGGCTTCAG 8554551 Query 13614 ACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAG 13673 | | ||| | ||| || || | | || |||||||| ||||||| || | Sbjct 8554550 GGA----TTCCCAGTGCCGAATGTCCTTGAACAGGTCCACCTCCTCGGCGGTCCAGAAGG 8554495 Query 13674 AAGCAACAGCCTTCTTATACATCATCCATATAT 13706 | || | ||||||||||||||| ||| |||| Sbjct 8554494 AGGCCTCCGCCTTCTTATACATCTGCCAGATAT 8554462 >seq18140 Length=5205659 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| ||| | Sbjct 751641 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTTTTCT 751582 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || || || || || | |||||| || || || || | Sbjct 751581 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGG 751522 Query 13293 CTATCAACCTTTCACC 13308 | | || ||||| || Sbjct 751521 CCACCACTCTTTCCCC 751506 Score = 93.3 bits (102), Expect = 4e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || ||||||||||||||||| ||||| |||||| Sbjct 760723 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 760664 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| |||||||||| Sbjct 760663 ATAAAATCAAAAGGATTTT 760645 >seq24714 Length=5211462 Score = 86.0 bits (94), Expect = 5e-12 Identities = 284/436 (65%), Gaps = 18/436 (4%) Strand=Plus/Plus Query 13151 CATGCAAAATCACAGTG--------CAATCCTTCATCTCTACTTATTAGCTCGTTTGAAA 13202 || |||||||||||||| || || ||||| || || || || || || |||| Sbjct 5055790 CAAGCAAAATCACAGTGTAAACTGTTAAACCCTCATCACTGCTAATAAGTTCATTGGAAA 5055849 Query 13203 ATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCG 13262 |||| || || | ||| || | | |||| || | || ||||| | || || ||||| | Sbjct 5055850 ATGTGAGGCCAGACATCAGTCATTGTTTCTTGAGGCAGAATATCGATGCGAAAGAACCAG 5055909 Query 13263 aaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAAC-CTTTCACCATACGTACTATTT 13321 || | || | ||||| | || ||||| ||| |||| ||| |||| ||| || | Sbjct 5055910 AAGAGAAGGTGCCTTCTA-TG--GCAAAGGCT-GCAACAAGTTCTCCATGGGTAGCATCT 5055965 Query 13322 TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT 13381 || || | ||||| |||||| | ||| | | | || || ||| |||| Sbjct 5055966 TTGTTCACAATCCAACACAAGGCCCAATCTGCCTCCTCCCTGACACAAGGCATCCTTTCA 5056025 Query 13382 ATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAG 13441 || || || || | | | | |||| || ||||| || || || || || || | Sbjct 5056026 ATGGCATTGAAGAGAAATTCCATTTCTTTGTTGTCTTTAACAT--GTGTCAATAAAGAGA 5056083 Query 13442 CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCC 13501 ||| ||| || |||| || |||||||| || |||||||| ||||| || || | Sbjct 5056084 TTATCCATGTCAGAATAGATGTTTTCCATAGCAATTTGGAAGCCATAGAAGCA---GGTT 5056140 Query 13502 TCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCA 13561 |||| |||||||||| | |||| || | ||||||| | |||| | || || Sbjct 5056141 TCTGTAGCCTGAACTTCTTGGACAAATTGCTCCACCAAGTTTTTATCAACTGTGCCATCG 5056200 Query 13562 CTAGCAGCaaaaaaaG 13577 | || ||||| |||| Sbjct 5056201 CATGCTGCAAAGAAAG 5056216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430830484360644