Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq19809 107 2e-18 seq5696 98.7 9e-16 seq24154 82.4 7e-11 >seq19809 Length=37303394 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | ||||||||||| ||||||||| |||| ||||||||| Sbjct 33037859 GGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGATG 33037800 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || || || || || || | || ||| |||| ||||| || || || ||||| |||||| Sbjct 33037799 CCCCAAGCAGAGAACCATGACCCAGACGTCAAGGAGCATGTGAATTCCCTGGGGGAAAAG 33037740 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 || || || | | || | ||||| ||||| Sbjct 33037739 CTGAAGACCTTCAGGCTGAGGCTGCGACGCTG 33037708 >seq5696 Length=1770758 Score = 98.7 bits (108), Expect = 9e-16 Identities = 174/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 5270 TCGGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGGTGCGATATGCGTTCGCATATT 5329 |||||||| ||||| | ||| |||| | | |||||| | || ||||| || || Sbjct 498397 TCGGTGTCATCCAAAGCTTGAACTTCTTCTATTTCTGGGTAAAAAATCCGTTCACAAATG 498456 Query 5330 AGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGC 5389 ||||| || || | || || || || || ||||| | || || || |||||||| Sbjct 498457 AGCTGTGCAATTCGATCACCTTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGT 498516 Query 5390 ACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAG 5449 || || || ||||| |||| | ||||| || || || ||||| || || || |||||| Sbjct 498517 ACAACACCAACATTTCCTCTACAATCTTCATCTATGACACCAGCTCCTACATCAATAAAG 498576 Query 5450 TGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACCAGGTGGGAGCTTT 5509 ||||| | || | ||| || |||| |||| | ||| || || ||| || ||| | Sbjct 498577 TGTTTTGCAGCCAAGCCAGACCGTGAAGCTACTCTTCCATAACACCCACAAGGAAGCACT 498636 Query 5510 ATCAGAAGGTCAGT 5523 ||| | | ||| || Sbjct 498637 ATCTGTATGTCTGT 498650 >seq24154 Length=2247477 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/209 (69%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 5270 TCGGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGGTGCGATATGCGTTCGCATATT 5329 |||||||| |||| | ||| ||| | | |||||| | || ||||| || || Sbjct 22914 TCGGTGTCACCCAAAGCTTGAACTTCT---ATTTCTGGGTAAAAAATCCGTTCACAAATG 22970 Query 5330 AGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGC 5389 ||||| || || | || || || || || ||||| | || || || |||||||| Sbjct 22971 AGCTGTGCAATTCGTTCACCTTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGT 23030 Query 5390 ACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAG 5449 || || || ||||| |||| || ||||| || |||| ||||| || || || |||||| Sbjct 23031 ACAACACCAACATTTCCTCTATAATCTTCATCTGTAACACCAGCTCCTACATCAATAAAG 23090 Query 5450 TGTTTGACCGCAAGGCCGGAACGTGGTGC 5478 ||||| | || | ||| || || || || Sbjct 23091 TGTTTTGCAGCCAAGCCAGACCGCGGAGC 23119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447588527036640