Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq12486 226 2e-54 seq19633 114 9e-21 seq16616 100 2e-16 >seq12486 Length=6174982 Score = 226 bits (250), Expect = 2e-54 Identities = 402/580 (69%), Gaps = 6/580 (1%) Strand=Plus/Plus Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446 ||||||||| |||||| || | || |||||| | ||||| || || | ||||| ||||| Sbjct 2654292 TGGGAAAGG-TCTGGGTTCTCGCTGAAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGT 2654350 Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAG 25506 | | || || ||||||| ||| || ||||| || ||||| | || || || | || | Sbjct 2654351 AAATATGTGCATCTCCCAAAGTATGTACAAAGTCACCCGGCTTCAGGCCCGTGATGTGCG 2654410 Query 25507 CCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGT 25566 | ||||||||| |||| || |||||||||||||| || || || || | || |||| Sbjct 2654411 CGATCATGTACATGAGCAGGGCCTAGCTGGCGATGTTGAAAGGCACACCTAGGCCGATGT 2654470 Query 25567 CCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACAC 25626 | ||||| | |||||| ||||| || || ||||| | | ||| || ||||| || Sbjct 2654471 -CTCCCGATCGCTGGTACAGCTGGCAGGACAGCTCACCATTCACCACTTAGAACTGGCAG 2654529 Query 25627 ATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACG 25686 | || | ||| ||||| || || || || | ||| | || ||||| | |||| | Sbjct 2654530 AGGGCATGGCATGGAGGCAGCGCCATCAGAGGAAGATCTCTTGGATTCCAAGTGCACGTG 2654589 Query 25687 ATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCC 25746 ||||| | ||||| || |||||| |||| || ||||||| || || Sbjct 2654590 ATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACTCTTTGCAGTTGGTCA 2654649 Query 25747 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCAC 25806 || || | || || || |||| ||| || | || ||||| || |||| |||||| Sbjct 2654650 ACTCCTTTTCCTGAATAATCTGAATCCATATC--TCTATTCTGCCCCAAAATGCCTCCAT 2654707 Query 25807 TGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCA-AAGCCCCTCTTATC 25865 ||||| || || || || || | ||| || ||||| ||| || | || ||| |||| Sbjct 2654708 TGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTG-GCGGAGAATCCCAAGCTATC 2654766 Query 25866 CAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 25925 || ||||||| | | |||||||| |||||||| || || ||||| | ||||||| Sbjct 2654767 CAGAAAGTCTTGGTATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGGCAGCTCTTC 2654826 Query 25926 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCC 25965 | |||||||| || ||| ||||||| || |||| || Sbjct 2654827 AGCATTTGTGGATCCCTTGATAAACCACAACAACTCCTCC 2654866 Score = 163 bits (180), Expect = 2e-35 Identities = 271/389 (70%), Gaps = 2/389 (1%) Strand=Plus/Plus Query 25578 CTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCA 25637 |||||| ||||| || || ||||| ||| ||| || ||||| || | || | ||| Sbjct 331988 CTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACTTAGAACTGGCAGAGGGCATGGCA 332047 Query 25638 CGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCT 25697 ||||| || || || || | ||| | || ||||| ||||||| |||||| | || Sbjct 332048 TGGAGGCAGCGCCATCAGAGGAAGATCTCTTGGATTCCAAGCGCACATGATGATTCTTCT 332107 Query 25698 GTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCC 25757 ||| || |||||| |||| || ||||||| || || || || || Sbjct 332108 GTCATCAGGGTTGGTTTTGATGGTGTCAATCACTCTTTGCAGTTGGTCAACTCCTTGTCC 332167 Query 25758 CGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTA 25817 || || |||| ||| || |||| ||||| || |||| |||||||||||| || || Sbjct 332168 TGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATA 332227 Query 25818 CACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCA-AAGCCCCTCTTATCCAAAAAGTCTC 25876 || || || | ||| || ||||| ||| || | || ||| |||||| |||||||| Sbjct 332228 AACTGGGCCCAAGTCCCCTTCTTCTCTG-GCGGAGAATCCCAAGCTATCCAGAAAGTCTC 332286 Query 25877 TGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGG 25936 ||| |||||||| |||||||| || || ||||| || |||||||| | ||||||| Sbjct 332287 GGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGG 332346 Query 25937 ACCCTCTGACGAACCACAGCAGCTCCGCC 25965 | || ||| |||||||||| |||| || Sbjct 332347 ATCCCTTGATAAACCACAGCAACTCCTCC 332375 >seq19633 Length=3468624 Score = 114 bits (126), Expect = 9e-21 Identities = 205/295 (69%), Gaps = 7/295 (2%) Strand=Plus/Minus Query 25672 TTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTG 25731 ||||| | ||||| |||||| | ||||| || |||||| |||| || Sbjct 1960016 TTCCAAGTGCACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACT 1959957 Query 25732 TTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCT 25791 ||||||| || || || || || || || |||| ||| || |||| ||||| Sbjct 1959956 CTTTGCAGTTGGTCAACTCCTTGTCCTGAATAATCTGAATCCATCTC--TGTATTCTGCC 1959899 Query 25792 CCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCA 25851 || |||| |||||||||||| || || || || || | ||| | |||| ||| || | Sbjct 1959898 CCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCC---CTTCTCTG-GCGGA 1959843 Query 25852 -AAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTT 25910 || ||| |||||| |||||||| ||| |||||||| |||||||| || || ||||| Sbjct 1959842 GAATCCCAAGCTATCCAGAAAGTCTCAGGATCCATTGGCATCCCAGATTTTCACTCCCTT 1959783 Query 25911 CTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCC 25965 || |||||||| | |||||||| || ||| |||||||||| ||| || Sbjct 1959782 GGATGACAGCTCTTTAGCATTTGTGGATCCCTTGATAAACCACAGCAATTCCTCC 1959728 >seq16616 Length=7972016 Score = 100 bits (110), Expect = 2e-16 Identities = 129/174 (74%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| ||||| || || | |||||||||||| || || || || || | ||| Sbjct 2016354 CATATCTCTGTATTCTGCCCCAAAGTGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 2016413 Query 25833 TCCATCTTCCCTGTGCTCA-AAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 || ||||| ||| || | || ||| |||||| ||| |||| ||| |||||||| | Sbjct 2016414 CCCTTCTTCTCTG-GCGGAGAATCCCAAGCTATCCAGAAAATCTCGGGATCCATTGGCAT 2016472 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 25945 ||||||| || || ||||| || |||||||| | |||||||| || |||| Sbjct 2016473 CCCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC-CTGA 2016525 Score = 91.5 bits (100), Expect = 1e-13 Identities = 111/150 (74%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||||||||| || ||||||||| ||||| || || || || | |||||| Sbjct 2012198 GCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGCACACCTAGGCCCATG 2012257 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | ||||| |||||||| ||||| || || ||||| ||| ||| || ||||| || Sbjct 2012258 T-CTCCCGATCTCTGGTACAGCTGGCAAGACAGCTCACCGTTCACCACATAGAACTGGCA 2012316 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | || | ||| ||||| || || || || Sbjct 2012317 GAGGGCATGGCATGGAGGCAGCGCCATCAG 2012346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340017705960306