Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq17667 86.0 3e-12 seq22295 84.2 1e-11 seq17404 84.2 1e-11 seq24446 82.4 4e-11 seq234 82.4 4e-11 >seq17667 Length=9714854 Score = 86.0 bits (94), Expect = 3e-12 Identities = 74/91 (81%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || ||||| || | | |||||| | |||||||||| ||||||| |||||||||||| Sbjct 6260952 AAAAAAAACTCCAGACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCA 6260893 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 | ||||||| |||||||||||||| ||||| Sbjct 6260892 CCACGCTCTAACCAACTGAGCTAACCGGCCG 6260862 >seq22295 Length=2611414 Score = 84.2 bits (92), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| | ||||| ||||| | |||| ||||| ||||||| ||||||||||||| || Sbjct 220857 AAAACAACAAAT-GGCCCGTACGGGGATTGAACCCGCGACCTTGGCGTTATTAGCACCAC 220799 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| |||||||||||||| ||||| Sbjct 220798 GCTCTAACCAACTGAGCTAACCGGCCG 220772 Score = 82.4 bits (90), Expect = 4e-11 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 11451 CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| |||||| | |||||||||| ||||||| ||||||||||||| ||||||| | Sbjct 101021 CAAAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAA 101080 Query 11511 CCAACTGAGCTAATGGGCCGTC 11532 || |||||||||| |||| || Sbjct 101081 CCGACTGAGCTAACCGGCCATC 101102 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 209700 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 209641 Query 11528 CC 11529 || Sbjct 209640 CC 209639 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 210727 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 210786 Query 11528 CC 11529 || Sbjct 210787 CC 210788 >seq17404 Length=3366760 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 1283302 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 1283361 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 1283362 CTGAGCTAACCGGCC 1283376 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1248232 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1248173 Query 11528 CC 11529 || Sbjct 1248172 CC 1248171 >seq24446 Length=4485989 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 111531 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 111590 Query 11528 CC 11529 || Sbjct 111591 CC 111592 >seq234 Length=7466 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1077 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACTGG 1018 Query 11528 CC 11529 || Sbjct 1017 CC 1016 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261399027784072