Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq25381 188 1e-42 seq16774 120 4e-22 >seq25381 Length=27760200 Score = 188 bits (208), Expect = 1e-42 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| || || |||| |||||| ||||| || |||| || |||||||||||| Sbjct 8844199 GTCTGGAACAACTGCTCATCACCCCATTCCGGATGCTCCTGTTTAAGCACATCGCACACT 8844140 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 |||||||||||||| |||||||| || || |||||||| |||||||||||||| ||||| Sbjct 8844139 CTGTTGTGTTCCCTCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 8844080 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 | || || || || || | |||| || || || |||| ||||| |||||||| | Sbjct 8844079 ACTTCCTGCCCCACCGCAAACCGCAGATGCTCAGGAACTTGAGGAGGGTAGATCATCTCT 8844020 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 |||| ||||||||| | ||| |||||||| || || ||||| |||| Sbjct 8844019 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 8843971 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 ||||||||| || ||||| ||||| ||||| || || |||||| ||| ||| | || Sbjct 8843037 TCTTACCCCGTGGCCCAGGCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 8842978 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| |||||||| || ||| |||| || |||||||| | || | |||||||||||| Sbjct 8842977 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGAGCCCTGGGGATC 8842918 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185 || |||| | || | |||||| ||||||||||| Sbjct 8842917 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAA 8842880 Score = 100 bits (110), Expect = 4e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || || ||||| || || || | ||| || ||||| || || | Sbjct 8842425 TCACCTTTCACACCCAGGGGAGTCGGGCAGTCATCAGGTACTGGAGGAAGGGCTCTAGTA 8842366 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 ||||||||||| || ||||| |||||||||||| ||| | ||||| | |||||| | Sbjct 8842365 TAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACATTGTAGGTT 8842306 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || || || |||||||||| ||||| ||||| Sbjct 8842305 GGTGGACTCTCAATCAAATGTGATCTGGCTGAA 8842273 Score = 87.8 bits (96), Expect = 3e-12 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| || ||||| ||||| || | |||||||| || || | Sbjct 8844788 CTTACCCTGCCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAACTCCATGTTCC 8844729 Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTTAATGTAGTCATACTTTGTTTTATCAATCT 9439 | | || || |||||||| | || ||| || ||| || || | || ||| | Sbjct 8844728 AGTAACATAGAGTTGTTGTAGATAAACTGTTGAT--AGTTGTAGTTCTGGTCATGAATTT 8844671 Query 9440 CAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9499 ||| | || |||| || | |||||||||||| | | |||||||| | | |||| Sbjct 8844670 GAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTATTAAACTCAGCAGCAATAC 8844611 Query 9500 GATTTTGGTACTGGAA 9515 |||||||||||||||| Sbjct 8844610 GATTTTGGTACTGGAA 8844595 >seq16774 Length=14477005 Score = 120 bits (132), Expect = 4e-22 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||||||||| ||| |||| || ||||| || ||||| || |||||||| |||| | Sbjct 3481345 TCTTGACGATGTTAAAGCCCATCTCACCGCCAAACGTGCTCGGCTTCCAGTATTCCGGAG 3481286 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | |||||| ||| | | ||| || ||||||||||| |||||||| | ||| | || | Sbjct 3481285 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATAC 3481226 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || ||||| | ||| ||| || |||||| | | | || | ||| ||||||| Sbjct 3481225 TCTCCCCAAAGATAGAGTTCGGATGGCACTTTTCAAGAAGCAGCCCAGGGTAGAACTCCA 3481166 Query 8919 CAGCCTCGATGTCTCCGTA 8937 || || |||||||| || Sbjct 3481165 ACGCATCAATGTCTCCATA 3481147 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 10086 || |||||||| |||| | || |||||| | || || || |||| | ||| | | Sbjct 3470693 CTCACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 3470636 Query 10087 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 10146 | |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| ||||| | Sbjct 3470635 AGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGGGGGT 3470576 Query 10147 CGGGAGTGAAGGTCCTCC 10164 | || |||| |||||| Sbjct 3470575 CAGGTATGAACTTCCTCC 3470558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708268650571680