Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq24446 172 9e-39 seq22295 134 2e-27 seq20882 134 2e-27 seq12874 123 4e-24 >seq24446 Length=4485989 Score = 172 bits (190), Expect = 9e-39 Identities = 194/260 (75%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||| | |||||| || |||||||| || ||||| ||||| ||||| Sbjct 581007 GCTAAGCGCCATCGTAAGGTTCTTCGGGACAACATCCAGGGCATCACAAAGCCGGCTATT 580948 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||| || || ||||| |||||||| | ||||| | ||||||| |||| | Sbjct 580947 CGCCGTTTGGCGCGGCGCGGTGGCGTCAAGCGCATATCTGGTCTCATCTATGAGGAGACT 580888 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| | ||| | | | |||||| | |||||| || || || ||| Sbjct 580887 CGAGGTGTGCTTAAGGTTTTCTTGGAAAACGTTATTCGAGATGCTGTCACTTACACGGAG 580828 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| ||||||||||| |||||||| |||| ||||| | |||||||| || Sbjct 580827 CACGCGAAACGCAAGACTGTCACTGCCATGGATGTCGTATATGCTCTAAAACGTCAGGGG 580768 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | |||||||| || Sbjct 580767 CGCACTCTCTATGGTTTCGG 580748 Score = 167 bits (184), Expect = 4e-37 Identities = 200/272 (74%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | || || ||||| |||||||| || |||||||| ||||| Sbjct 641829 CGCCAAGCGTCACCGTAAAGTGCTGCGGGATAATATCCAAGGTATTACCAAGCCGGCTAT 641888 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| | ||||| || || ||||| |||| || ||| | || || |||| Sbjct 641889 CCGACGCCTGGCCAGGCGTGGGGGGGTTAAGCGAATCTCGGGTTTGATTTACGAGGAGAC 641948 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| ||||||| ||| || |||| ||||| | ||||||||| Sbjct 641949 TCGCGGGGTACTCAAGGTCTTCCTGGAGAATGTGATCCGAGATGCAGTGACCTATACCGA 642008 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||||||||| |||||||| | || || || |||| |||||||| Sbjct 642009 GCACGCCAAGCGGAAGACTGTCACTGCCATGGATGTGGTTTACGCGCTGAAGCGTCAAGG 642068 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 ||| | | || || || || |||||| || Sbjct 642069 CCGCACTCTGTACGGCTTCGGCGGTTAATTTT 642100 Score = 145 bits (160), Expect = 1e-30 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | ||| |||||||||||||| || ||||| ||||| || || Sbjct 343768 CGCAAAGCGTCACCGTAAGGTTCTGCGAGATAACATCCAGGGTATCACTAAGCCGGCCAT 343827 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| |||||||| || || ||||||||| | ||||| | ||||||| |||| Sbjct 343828 CCGGCGTCTTGCTCGTCGCGGCGGCGTCAAGCGTATTTCTGGCCTCATCTATGAGGAGAC 343887 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| ||||| | || || ||| || |||| ||| || || || || || Sbjct 343888 TCGCGGCGTTCTGAAGGTGTTTCTGGAGAATGTGATCCGTGACGCGGTCACTTACACGGA 343947 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||||||| || || || || | ||||| | ||||| || | || || || || Sbjct 343948 GCACGCTAAACGCAAAACCGTGACAGCAATGGACGTGGTCTACGCTCTCAAGCGGCAGGG 344007 Query 16672 CCG 16674 || Sbjct 344008 ACG 344010 Score = 136 bits (150), Expect = 6e-28 Identities = 189/262 (72%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||| | | | || || || |||||||| ||||||||||| || || | Sbjct 508784 CGCCAAGCGCCATCGTA-AGGTATTGCGTGACAACATCCAGGGAATCACCAAACCCGCCA 508842 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||||| || || || ||||||||| | ||||| | ||||||| |||| Sbjct 508843 TCCGGCGCTTGGCTCGCCGCGGCGGCGTCAAGCGTATTTCTGGTCTCATCTATGAGGAGA 508902 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||||| || ||||| | ||||| | | ||||||| |||||| || || || | Sbjct 508903 CTCGTGGAGTGCTGAAGGTTTTCCTGGAAAATGTTATCCGCGATGCTGTCACGTACACGG 508962 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | || || ||||| ||||| ||||| ||||||| | ||||| || | || || || | Sbjct 508963 AACATGCCAAACGCAAGACGGTCACAGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 509022 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | | ||||| || || Sbjct 509023 GACGCACTCTGTATGGCTTCGG 509044 Score = 134 bits (148), Expect = 2e-27 Identities = 188/261 (72%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | | || || || |||||||| || ||||||||||| || || Sbjct 647768 GCCAAGCGCCACCGCA-AGGTGTTGCGTGACAACATCCAGGGCATCACCAAGCCGGCCAT 647710 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || || ||||| || |||||||| | ||||| || | || || |||| Sbjct 647709 CCGGCGCCTTGCCCGGCGTGGCGGGGTCAAGCGAATATCTGGTCTGATATACGAGGAGAC 647650 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| | ||| | ||| ||| |||| ||| ||| || |||||| || Sbjct 647649 TCGAGGGGTGCTCAAGGTATTCTTGGAGAACGTGATCCGTGACGCTGTCACCTATACGGA 647590 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || |||||||| ||||| ||||||| | ||||| || | || || || || Sbjct 647589 ACACGCCAAGCGTAAGACGGTCACTGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 647530 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | |||| || ||||| Sbjct 647529 ACGCACCCTTTACGGCTTTGG 647509 Score = 131 bits (144), Expect = 3e-26 Identities = 177/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | || || |||||||||||||| || ||||| ||||| || | Sbjct 495054 CGCAAAGCGTCACCGTAAGGTC-CTGCGAGATAACATCCAGGGCATCACTAAGCCGGCCA 494996 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || || |||||||| || || ||||||||| | ||||| | ||||||| |||| Sbjct 494995 TCCGGCGCCTTGCTCGTCGCGGCGGCGTCAAGCGTATTTCTGGCCTCATCTATGAGGAGA 494936 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | ||| ||||| | || || ||| || |||| ||| || | || || | Sbjct 494935 CTCGCGGCGTTCTGAAGGTGTTTCTGGAGAATGTGATCCGTGACGCGGTAACTTACACAG 494876 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| || || | ||||| | ||||| || | || || || | Sbjct 494875 AGCACGCCAAGCGCAAGACCGTGACAGCGATGGACGTGGTCTACGCTCTCAAGCGGCAGG 494816 Query 16671 GCCG 16674 | || Sbjct 494815 GACG 494812 >seq22295 Length=2611414 Score = 134 bits (148), Expect = 2e-27 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || |||||||||||||| ||||| || |||||||| || || Sbjct 71882 CTGCGCGACAACATCCAGGGCATCACCAAGCCAGCCATCCGGCGCCTGGCTCGCCGCGGC 71941 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| ||||||| | ||||||| |||| || | || | ||| | ||| Sbjct 71942 GGCGTGAAGCGCATCTCTGGCCTCATCTATGAGGAGACCCGCGGGGTGCTCAAGGTGTTC 72001 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || | ||| || |||||||| || || ||||| ||| Sbjct 72002 CTGGAGAACGTGATCCGGGACGCCGTGACCTACACGGAGCACGCCAAGCGCAAGACGGTC 72061 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| | || || || | || || || ||||| | | ||||| ||||| Sbjct 72062 ACCGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGGCCGCACCCTCTATGGCTTTGG 72120 Score = 120 bits (132), Expect = 5e-23 Identities = 183/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| || || || |||||||| || ||||||||||| || || Sbjct 745631 CGCCAAGCGTCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 745690 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || || ||||| |||| || | |||| || |||| Sbjct 745691 CCGGCGCCTGGCTCGCCGCGGCGGCGTGAAGCGCATCTCCGGTCTCATCTACGAGGAGAC 745750 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || | ||| || || Sbjct 745751 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTGACCTACACGGA 745810 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | || || || | || || || || Sbjct 745811 GCACGCCAAGCGCAAGACGGTCACTGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 745870 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | ||||| || || Sbjct 745871 CCGCACCCTCTATGGCTTCGG 745891 Score = 120 bits (132), Expect = 5e-23 Identities = 183/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| || || || |||||||| || ||||||||||| || || Sbjct 764672 CGCCAAGCGTCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 764613 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || || ||||| |||| || | |||| || |||| Sbjct 764612 CCGGCGCCTGGCTCGCCGCGGCGGCGTGAAGCGCATCTCCGGTCTCATCTACGAGGAGAC 764553 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || | ||| || || Sbjct 764552 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTGACCTACACGGA 764493 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | || || || | || || || || Sbjct 764492 GCACGCCAAGCGCAAGACAGTCACTGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 764433 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | ||||| || || Sbjct 764432 CCGCACCCTCTATGGCTTCGG 764412 Score = 120 bits (132), Expect = 5e-23 Identities = 183/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 793577 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 793518 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || || ||||| |||| || | |||| || |||| Sbjct 793517 CCGGCGCCTGGCTCGCCGCGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 793458 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || || | ||| || || Sbjct 793457 CCGCGGGGTGCTCAAGGTATTCCTGGAGAACGTGATCCGGGACGCCGTGACCTACACGGA 793398 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | || || || | || || || || Sbjct 793397 GCACGCCAAGCGCAAGACAGTCACCGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 793338 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | ||||| || || Sbjct 793337 CCGCACCCTCTATGGCTTCGG 793317 >seq20882 Length=140948 Score = 134 bits (148), Expect = 2e-27 Identities = 189/263 (72%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | |||| | || |||||||| || ||||||||||| || | Sbjct 137983 CGCTAAGCGCCACCGCA-AGGTCTTGAGGGACAACATCCAGGGCATCACCAAGCCGGCGA 138041 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||| ||||| || || ||||| |||| || || | || || |||| Sbjct 138042 TCCGGCGTCTAGCTCGGCGTGGCGGCGTTAAGCGGATCTCCGGCCTGATTTACGAGGAGA 138101 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| | ||||| ||| ||| || | || || || ||| || | Sbjct 138102 CCCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATTCGGGACGCGGTCACCTACACGG 138161 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| |||||||| | || || || | || || || | Sbjct 138162 AGCACGCCAAGCGCAAGACCGTCACGGCCATGGATGTGGTGTACGCGCTCAAGCGCCAGG 138221 Query 16671 GCCGTAAGATTTATGGTTTTGGA 16693 | || | | || || |||||| Sbjct 138222 GGCGCACCCTGTACGGCTTTGGA 138244 >seq12874 Length=8709903 Score = 123 bits (136), Expect = 4e-24 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||||||||| || || ||||| || || || || || ||||| ||||| || ||| Sbjct 6264832 GACAACATCCAAGGCATTACGAAGCCCGCGATTCGCCGCCTCGCTCGACGTGGGGGCGTC 6264891 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| ||||||| | |||| ||||||| || | || | || ||||||| || Sbjct 6264892 AAGCGCATCTCTGGTCTCATCTACGAAGAGACCCGCGGAGTCCTCAAAGTCTTCCTGGAG 6264951 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| || || | || || |||||||| || || ||||| ||||| || Sbjct 6264952 AATGTGATCCGCGACGCAGTGACTTACACGGAGCACGCCAAGCGCAAGACCGTCACGGCC 6265011 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||||| | || || || ||||||| || ||||| | ||||||| || || Sbjct 6265012 ATGGATGTGGTGTACGCGCTGAAACGCCAGGGCCGCACCCTTTATGGCTTCGG 6265064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79048756412946