Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq23499 253 2e-62 seq12132 253 2e-62 seq22719 233 2e-56 seq27380 98.7 1e-15 seq18140 89.7 5e-13 >seq23499 Length=2348749 Score = 253 bits (280), Expect = 2e-62 Identities = 529/788 (67%), Gaps = 8/788 (1%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | |||||||| | |||| Sbjct 2215557 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGATTTGACATCACTCCC 2215616 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| |||| ||||| | || || || || ||||||||||||| ||| ||| Sbjct 2215617 ATCCTCTGATACTCACCTACTCTCGTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 2215676 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 |||||||| ||||||||||| || | | || | || || |||||||||| | Sbjct 2215677 TTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCC-AG 2215735 Query 21302 AATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360 |||| ||| ||||| ||||| | || | ||| ||||| || ||||| || | Sbjct 2215736 CATAAGTCTGTCTGCCACAAACCCAATGTGTTGCTTCATTAGAGTGCAGTTCATCCCAGT 2215795 Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT 21420 | || ||||| | || | || | || | |||| || || | | ||| Sbjct 2215796 GAGCTTCACAGGCAAGGCCTCAGTGAGGAACTCCTGCTCTAACCGAACAGCATTGATAAT 2215855 Query 21421 TATATTTATTATCCTAGATGTACTAGGGGGATACAATAAT---TGTTTAAACATCAAACA 21477 ||| | | ||| ||| | || | || | || | ||||| ||||||| || Sbjct 2215856 TATTTCTCTTACCCTC--TCCTCT-GATGGTTTGTGTACTGGGTGTTTGAACATCAGGCA 2215912 Query 21478 TGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACC 21537 ||||||||||| || ||||| ||||| || || || | ||||||||||||||| | || Sbjct 2215913 AGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCC 2215972 Query 21538 GGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAAT 21597 ||||| | ||||| || || | ||| ||||| || ||||| | || ||||||||||| Sbjct 2215973 AGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAAAT 2216032 Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATAT 21657 ||| || || |||||||| || || | |||||||| || ||| ||||| ||| | Sbjct 2216033 GCCTTCCACTGCAGCAAAGGCTACGACACGTTCACCATAGGTAACCTCTTTGTCCCCAGT 2216092 Query 21658 CCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAA 21717 ||| | ||||| | |||||| | || | |||| || || |||| || || || Sbjct 2216093 CCAGTGCAAGGCCCAGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAACGGCATTGAA 2216152 Query 21718 AAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTC 21777 ||| | |||| ||| ||||| |||||||||||| Sbjct 2216153 GAGAAATTCCCTTTCGCTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTC 2216212 Query 21778 AGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTG 21837 ||||||||| ||||| | || || || ||||| || ||||| | || |||| | || Sbjct 2216213 AGAATGTATGTTTTCCCTGGCAATTTGGAATCCATAGAAACAGCGGGCTTCTGTAATCTG 2216272 Query 21838 AACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAA 21897 |||||| |||||| | ||||||||||||||||||| || | ||| || ||||| Sbjct 2216273 AACCTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCCTTACTCGCTGCAAA 2216332 Query 21898 AAATGCCA 21905 || |||| Sbjct 2216333 GAAAGCCA 2216340 >seq12132 Length=2475592 Score = 253 bits (280), Expect = 2e-62 Identities = 532/790 (67%), Gaps = 14/790 (2%) Strand=Plus/Minus Query 21121 ATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCC 21180 ||| ||||| || |||||||| || | ||| ||| ||| | ||||||| | ||| Sbjct 57356 ATTCATTTAGAAGTCAGCATCCAAAGTAAAAGAATTCTCTGTTGGACTTGACATCACTCC 57297 Query 21181 CATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATAT 21240 ||| | ||||| || | ||||| || || || || || |||| |||||||| ||| || Sbjct 57296 CATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTATCCTTCCAGTGAAAT 57237 Query 21241 AGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGA 21300 | |||||||| ||||||||||| || | | || | || || |||||||||| | Sbjct 57236 ATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCC-A 57178 Query 21301 TAATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGA 21359 |||| ||| |||| ||||| || || ||||| ||||| || ||||| || | Sbjct 57177 GCATAAGTCTGCCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAGTTCATCCCAA 57118 Query 21360 TCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAA 21419 | | || ||||| | ||| | || | || | |||||| || || | | || Sbjct 57117 TGAGCTTCACAGGCAAAGCCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCATTGATAA 57058 Query 21420 TTATATTTATTATCCTAGATGTACT-AGGG---GGATACAATAATTGTTTAAACATCAAA 21475 |||| || || || | || | || | ||| || ||||| ||||||| Sbjct 57057 TTAT--TTCGCATACTCTCTCCTCTGATGGTTTGTGTAC--TAGGTGTTTGAACATCAGG 57002 Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535 || ||||||||||| || ||||| ||||| || || || | ||||||||||||||| | Sbjct 57001 CAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGG 56942 Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAA 21595 || ||||| | ||||| || || | ||| ||||| || ||||| | || |||||||| Sbjct 56941 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAG 56882 Query 21596 ATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAAT 21655 ||||| || || |||||||| || || |||||||| || |||| | ||| ||| Sbjct 56881 ATGCCTTCCACTGCAGCAAAGGCTAC-GCGCGTTCACCATAGGTAGCCTGTTTGTCCCCA 56823 Query 21656 ATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTT 21715 ||||| ||||| | || ||| || | |||| || || ||||| || || Sbjct 56822 ATCCAGCGCAAGGCCCAATCTGACTT---CTTGACACAAGGCATCGTTTCAATGGCATTG 56766 Query 21716 AAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATT 21775 || ||| | |||| | ||| ||||| |||||||||| Sbjct 56765 AAGAGAAATTCCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATACATT 56706 Query 21776 TCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACAT 21835 ||||||||||| ||||| || || || || || || || ||||| | || |||| | Sbjct 56705 TCAGAATGTATGTTTTCCATGGCAATTTGGAAACCATAGAAACAGCGGGCTTCTGTAATC 56646 Query 21836 TGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCA 21895 ||||| || | |||||| | ||||||||||||||||||| ||||||| || ||| Sbjct 56645 TGAACTTCTTGGTTAAATCGCTCCACCAAGTTTTCATTTACTATGTCATCACTTGCTGCA 56586 Query 21896 AAAAATGCCA 21905 || || |||| Sbjct 56585 AATAAAGCCA 56576 >seq22719 Length=8987742 Score = 233 bits (258), Expect = 2e-56 Identities = 519/782 (66%), Gaps = 28/782 (4%) Strand=Plus/Minus Query 21131 AAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTTTTGA 21190 || |||||||| || | ||| ||| ||| | ||||||| | |||||| | ||| Sbjct 8555348 AAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATCCTCTGA 8555289 Query 21191 TAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCATA 21250 || || | ||||| || || || || || ||||||||||||| ||| ||| |||||| Sbjct 8555288 TACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTCCATA 8555229 Query 21251 AAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAA-TCT 21309 || |||||||||| || | | || | || || |||||||||| | |||| ||| Sbjct 8555228 AAGGCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCC-AGCATAAGTCT 8555170 Query 21310 ATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTAC 21369 ||||| ||||| || || ||||| ||||| |||||||| || || | || || Sbjct 8555169 GTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCAC 8555110 Query 21370 AGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTAT 21429 ||| | || | || | || | |||||| || || | | |||||| | | | Sbjct 8555109 AGGCAAGGCCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCATTCATAATTATTTCTCT 8555050 Query 21430 TA-----TCCTA-GATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAA 21483 || |||| |||| | | ||| || ||||| ||||||| || ||||| Sbjct 8555049 TACTCTCTCCTCTGATGGTTTGTG----TACTATG--TGTTTGAACATCAGGCAAGCAAA 8554996 Query 21484 ATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCAT 21543 |||||| || ||||| ||||| || || || | ||||||||||||||| | || ||||| Sbjct 8554995 ATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCAT 8554936 Query 21544 TAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTC 21603 | ||||| || || | ||| ||||| || ||||| | || |||||||| ||||| || Sbjct 8554935 CAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTC 8554876 Query 21604 AACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTT 21663 || |||||||| || || | |||||||| || |||| ||||| ||| ||||| Sbjct 8554875 CACTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCG 8554816 Query 21664 TTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATG 21723 ||||| | |||||| | | | |||| || || ||||| || || |||||| Sbjct 8554815 CAAGGCCCAATCTGCCTTCTTCTGGACACAAGGCATCGTTTCAATGGCATTGAAAAGAAA 8554756 Query 21724 AtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATG 21783 | |||| | ||| ||||| |||||||||||||||||| Sbjct 8554755 TTCCCTTTCGTTGGGATCTTTTATGCAAGTGTCAATAAGGAAACTATACATTTCAGAATG 8554696 Query 21784 TATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTC 21843 ||| ||||| || || || |||| | | |||| | ||||| || Sbjct 8554695 TATGTTTTCCATGGC--------------AATAACAGCGGGTTTCTGTAATCTGAACTTC 8554650 Query 21844 GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGC 21903 |||| | | ||||||||||||||||||| ||||||| || ||||| || || Sbjct 8554649 TTGGCTAAATTGCTCCACCAAGTTTTCATTTACTATGTCATCACTTGCTGCAAAGAAAGC 8554590 Query 21904 CA 21905 || Sbjct 8554589 CA 8554588 >seq27380 Length=10165399 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||| || || || | ||||||||||||||| | || ||||| | ||||| || || Sbjct 7666513 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 7666572 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 | ||| ||||| || ||||| | || |||||||| ||||| || || |||||||| || Sbjct 7666573 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 7666632 Query 21620 ACTAATCGTTCACC 21633 || | |||||||| Sbjct 7666633 ACGACCCGTTCACC 7666646 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | ||||||| | |||| Sbjct 7664665 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 7664724 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || || ||||||||||||| ||| ||| Sbjct 7664725 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 7664784 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||||| ||||||||||| || Sbjct 7664785 TTCTCCATAAAGTCAAATGGATTCTC 7664810 >seq18140 Length=5205659 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| ||||| || | ||| || || ||| ||| || ||||| | | | Sbjct 760785 TTTAAAAATCTGCATCCAAAGTGAAGACGTTGTCTGTGGTTTCTGCCATAACTGCAAAAC 760726 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| ||| || || |||||||| |||||||| || || || || Sbjct 760725 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTT 760666 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 760665 CCATAAAATCAAAAGGATTTTC 760644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531708504563280