Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq22719 134 4e-26 seq23499 113 1e-19 seq12132 113 1e-19 seq12486 100 7e-16 seq19633 87.8 5e-12 seq27380 84.2 6e-11 >seq22719 Length=8987742 Score = 134 bits (148), Expect = 4e-26 Identities = 335/503 (67%), Gaps = 8/503 (2%) Strand=Plus/Plus Query 22436 AGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAAC 22492 |||| |||||||||||||| || ||||| | |||| || | | | | |||| Sbjct 8554793 AGAAGAAGGCAGATTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCTACCTATGGTGAAC 8554852 Query 22493 GTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCT 22552 | || | || ||||||| || |||||||| ||||||||||| | ||| | || | Sbjct 8554853 GCGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATAT 8554912 Query 22553 TTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCC 22612 | ||||| || ||||| | | | ||||| || || || ||||| ||||| | |||||| Sbjct 8554913 TCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCA 8554972 Query 22613 GAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATA 22672 ||||||||||| | || |||||||| || || | | || || || || | || | Sbjct 8554973 GAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGT-TC--AAACACATAGTACACA 8555029 Query 22673 AACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTAT 22732 ||| || | || | ||| || || |||| ||||| ||| | |||| | Sbjct 8555030 AACCATCAGAGGAGAGAGTAAGAGAAATAATTATGAATGCTGTTCGGATAGAACAGGAGT 8555089 Query 22733 TTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATC-AATGAGTACA 22791 | | ||||| || || || | |||||||| || ||| | | || ||||| | Sbjct 8555090 TCCTCACTGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGC-ACTCTAATGAAGCAA 8555148 Query 22792 TATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAAC 22851 || ||| | ||||| ||||| | || | | ||| |||| | ||| || | Sbjct 8555149 TACATTGAGTTTGTGGCAGACAGACTTATGCTGGAACTGGGTTTTAGCAAGGTTTTCAGA 8555208 Query 22852 GTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTC 22911 || | |||||||||| | ||||| ||||||||| ||||||||||| || ||||| Sbjct 8555209 GTAGAGAATCCATTTGCCTTTATGGAGAATATTTCACTGGAAGGAAAGACTAACTTCTTT 8555268 Query 22912 GAAAAAAGAGTTGGTGAATACCA 22934 || || ||||| || || || || Sbjct 8555269 GAGAAGAGAGTAGGCGAGTATCA 8555291 >seq23499 Length=2348749 Score = 113 bits (124), Expect = 1e-19 Identities = 332/505 (66%), Gaps = 10/505 (2%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491 ||||| |||||||| ||||| || | |||| | |||| || | | | | ||| Sbjct 2216122 AAGAAGAAGGCAGACTGGGCCTTGCACTGGACTGGGGACAAAGAGGTTACCTATGGTGAA 2216063 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 ||| | | || ||||||| || |||||||||||||||||||| | ||| | || Sbjct 2216062 CGTGTCGTAGCCTTTGCTGCAGTGGAAGGCATTTTCTTTTCTGGTTCTTTTGCATCCATA 2216003 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 || ||||| || ||||| | | | ||||| || || || ||||| ||||| | |||||| Sbjct 2216002 TTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGC 2215943 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCAT 22671 ||||||||||| | || |||||||| || || | | || || || | || Sbjct 2215942 AGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGT-TC--AAACACCCAGTACAC 2215886 Query 22672 AAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTA 22731 |||| || | || | ||| || || |||| ||||| ||| | || | Sbjct 2215885 AAACCATCAGAGGAGAGGGTAAGAGAAATAATTATCAATGCTGTTCGGTTAGAGCAGGAG 2215826 Query 22732 TTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAA-TGCCGAATC-AATGAGTA 22789 || | ||||| || || || | |||| ||| || || ||| | || ||||| Sbjct 2215825 TTCCTCACTGAGGCCTTGCCTGTGAAGCTCACTGGGATGAACTGC--ACTCTAATGAAGC 2215768 Query 22790 CATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATA 22849 | | ||| ||||| ||||| | || | | ||| |||| | ||| || | Sbjct 2215767 AACACATTGGGTTTGTGGCAGACAGACTTATGCTGGAACTGGGTTTTAGCAAGGTTTTCA 2215708 Query 22850 ACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCT 22909 || | ||||||||||| | ||||| ||||||||| ||||||||||| || |||| Sbjct 2215707 GAGTAGAGAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGAAAGACTAACTTCT 2215648 Query 22910 TCGAAAAAAGAGTTGGTGAATACCA 22934 | || | ||||| ||||| || || Sbjct 2215647 TTGAGACGAGAGTAGGTGAGTATCA 2215623 >seq12132 Length=2475592 Score = 113 bits (124), Expect = 1e-19 Identities = 290/436 (67%), Gaps = 7/436 (2%) Strand=Plus/Plus Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTa 22560 || ||||||| || |||||||| ||||||||||| | ||| | || || ||||| Sbjct 56859 GCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCTC 56918 Query 22561 aaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAG 22620 || ||||| | | | ||||| || || || ||||| ||||| | |||||| |||||||| Sbjct 56919 AAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGATGAG 56978 Query 22621 GGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAACTTCCA 22680 ||| | || |||||||| || || | | || || || | | || |||| || Sbjct 56979 GGTTTACACTGTGATTTTGCTTGCCTGATGT-TC--AAACACCTAGTACACAAACCATCA 57035 Query 22681 TATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGC 22740 | || | ||| || || |||| ||||| ||| | |||| || | Sbjct 57036 GAGGAGAGAGTATGCGAAATAATTATCAATGCTGTTCGGATAGAACAGGAGTTCCTCACT 57095 Query 22741 GAGGCGTTACCAGTAAGTCTCATTGGTATCAA-TGCCGAATC-AATGAGTACATATATTA 22798 ||||| || || || | |||||||| || || ||| | || ||||| ||| ||| Sbjct 57096 GAGGCTTTGCCTGTGAAGCTCATTGGGATGAACTGC--ACTCTAATGAAGCAATACATTG 57153 Query 22799 AATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCGTTA 22858 | ||||| |||| | || | | ||| |||| | ||| || | || | | Sbjct 57154 AGTTTGTGGCAGGCAGACTTATGCTGGAACTGGGTTTTAGCAAGGTTTTCAGAGTAGAGA 57213 Query 22859 ATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAA 22918 |||||||||| | ||||| ||||||||| |||||| |||| || ||||| || || | Sbjct 57214 ATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGATAGACTAACTTCTTTGAGAAGA 57273 Query 22919 GAGTTGGTGAATACCA 22934 |||| || || || || Sbjct 57274 GAGTAGGCGAGTATCA 57289 >seq12486 Length=6174982 Score = 100 bits (110), Expect = 7e-16 Identities = 214/314 (68%), Gaps = 18/314 (6%) Strand=Plus/Minus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATAT----TGGAAGGGAATTGTCGAAGAACTTCT 111370 ||||| || || ||||| ||||||| | |||||||| || | || || | || Sbjct 332419 TTTCCTCTGCTGACAAC----CGAACATCTGTTCTGGAAGGGTGTTTTGGAGGAGTTGCT 332364 Query 111371 GTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTG 111430 ||||||||| ||| |||||||| || || || | | || || ||||| || Sbjct 332363 GTGGTTTATCAAGGGATCCACAAATGCTAAAGAGCTGTCTTCCAAGGGAGTGAAAATCTG 332304 Query 111431 GGATGGAAATGGATCACGTGACTTTCTAGATTCAG-TTGGTCTTGT-CGACAACGAAGAA 111488 ||||| |||||||| || |||||||| ||| || |||| || | || || |||||| Sbjct 332303 GGATGCCAATGGATCCCGAGACTTTCTGGAT--AGCTTGGGATTCTCCGCCAGAGAAGAA 332246 Query 111489 GGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACC 111548 || || | || |||||||| || || || ||| | || ||||| ||||| |||| | Sbjct 332245 GGGGACTTGGGCCCAGTTTATGGCTTCCAGTGGAGGCATTTTGGGGCAGAATACAGAGAT 332186 Query 111549 ATGCACGACTCATATGATTC---ACAGGGAACTGATCAATTACAGAATGTCATTGATCAA 111605 ||| || ||| || |||| ||| ||| ||| ||| | || | || ||||| Sbjct 332185 ATG---GATTCAGATTATTCAGGACAAGGAGTTGACCAACTGCAAAGAGTGATTGACACC 332129 Query 111606 ATTAAGAACAACCC 111619 || || | |||||| Sbjct 332128 ATCAAAACCAACCC 332115 >seq19633 Length=3468624 Score = 87.8 bits (96), Expect = 5e-12 Identities = 190/279 (68%), Gaps = 13/279 (5%) Strand=Plus/Plus Query 111345 TGGAAGGGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAA 111404 |||||||| || | || ||| | ||||||||||| ||| |||||||| || || Sbjct 1959714 TGGAAGGGTGTTTTGGAGGAATTGCTGTGGTTTATCAAGGGATCCACAAATGCTAAAGAG 1959773 Query 111405 CTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCA 111464 || || | || || ||||| ||||||| |||||||| | |||||||| ||| | Sbjct 1959774 CTGTCATCCAAGGGAGTGAAAATCTGGGATGCCAATGGATCCTGAGACTTTCTGGAT--A 1959831 Query 111465 G-TTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCG 111523 | |||| || || | | |||||| || | || |||||||| || || || ||| | Sbjct 1959832 GCTTGGGATTCTC--CGCCAGAGAAGGGGACTTGGGCCCAGTTTATGGCTTCCAGTGGAG 1959889 Query 111524 CCACTTTGGTGCAGACTACAAAACCATGCACGACTCATATGATTC---ACAGGGAACTGA 111580 || ||||| ||||| |||| | ||| || ||| || |||| ||| ||| ||| Sbjct 1959890 GCATTTTGGGGCAGAATACAGA--GATG---GATTCAGATTATTCAGGACAAGGAGTTGA 1959944 Query 111581 TCAATTACAGAATGTCATTGATCAAATTAAGAACAACCC 111619 ||| | || | || ||||| || || | |||||| Sbjct 1959945 CCAACTGCAAAGAGTGATTGACACCATCAAAACCAACCC 1959983 >seq27380 Length=10165399 Score = 84.2 bits (92), Expect = 6e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTa 22560 || ||||||| || |||||||| ||||||||||| | ||| | || || ||||| Sbjct 7666631 GCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCTC 7666572 Query 22561 aaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAG 22620 || ||||| | | | ||||| || || || ||||| ||||| | |||||| |||||||| Sbjct 7666571 AAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGATGAG 7666512 Query 22621 G 22621 | Sbjct 7666511 G 7666511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302870625217004