Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq24834 82.4 7e-11 seq20631 82.4 7e-11 >seq24834 Length=2526834 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/226 (70%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 23985 AACAAAATGCA-AGTGTTTGTAAAAACA-TTAACTGGAAAATCGATTACCATCGAAGTCG 24042 ||||||||||| ||| ||||| ||||| |||| |||| | | || ||| || | || | Sbjct 2358844 AACAAAATGCAGAGT-TTTGTGAAAACCCTTAAGGGGAAGACC-ATCACCCTCAAGGTTG 2358901 Query 24043 AGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTC 24102 | || || || || || | || || ||||| | || ||||| || |||| Sbjct 2358902 AACCCTCGGATACGATAGAAAATGTAAAGGCTAAGATCCAGGTTAAGGAAGGAATTCCTC 2358961 Query 24103 CCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAG 24160 | |||||||| |||||||| | | ||||||||||| |||||| ||| | | ||| Sbjct 2358962 CTGATCAACAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTCTGTC-- 2359019 Query 24161 CGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 || || ||||||||||| || || || ||||| | ||||| ||| Sbjct 2359020 TGACTACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGA 2359065 >seq20631 Length=3741062 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 || || ||||| || ||||| ||||| || |||||||| || | ||||||||||| ||| Sbjct 1077955 GATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTATGCTGGCAAGCAACTAGAA 1078014 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| | | || || || ||||||||||| || ||||| ||||| | ||||| Sbjct 1078015 GATGGACGTACTCTCTCTGACTACAACATTCAAAAGGAGTCTACTCTTCATCTGGTGTTG 1078074 Query 24204 AGA 24206 ||| Sbjct 1078075 AGA 1078077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429784453202910