Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq15423 104 2e-17 seq15807 98.7 8e-16 seq20631 96.9 3e-15 seq26070 93.3 4e-14 seq24834 93.3 4e-14 seq18140 91.5 1e-13 seq5696 91.5 1e-13 seq27641 89.7 4e-13 seq16297 86.0 5e-12 >seq15423 Length=9779632 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| |||||||| ||||| || ||||| || || |||||| ||||| || || Sbjct 6864345 AAAATGCAGATTTTTGTGAAAACTCTTACGGGGAAGACTATTACCCTCGAAGTTGAACCC 6864404 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 || || ||| || || ||||| ||||| ||||| ||||| | || ||| Sbjct 6864405 TCGGATAC-GTTAGAAAATGTAAAGGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGA 6864463 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 |||||||||||| || | ||| ||||| ||| | ||||||| || || | || || Sbjct 6864464 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 6864523 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATG 115492 |||||||| | ||||||||| | ||| || Sbjct 6864524 CAACATTCAGATGGAGTCTACTCTGCATCTG 6864554 >seq15807 Length=9314881 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| |||||||| ||||| || | ||| || ||||| ||| |||| ||| | Sbjct 6716423 AAAATGCAGATTTTTGTGAAAACCCTTATGGGGAAGACCATCACCCTCGAGGTTGAGCCT 6716482 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | ||||| || || ||||| ||||| | || |||| Sbjct 6716483 TCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTTCTGAT 6716542 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| || | ||| |||| ||| | ||||||| || || | || || Sbjct 6716543 CAGCAAAGACTGATCTTTGCTAGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTAC 6716602 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGA 115501 ||||||||||| ||||||| | | ||| | ||||||||| Sbjct 6716603 AACATTCAAAAGGAGTCTATTCTTCATCTTGTGTTGAGA 6716641 >seq20631 Length=3741062 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| ||||| | || ||||||||||||||| || ||||| ||||| ||| ||||| Sbjct 1077955 GATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTATGCTGGCAAGCAACTAGAA 1078014 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| || | | || || ||||||||||| ||||||||| | ||| |||||||| Sbjct 1078015 GATGGACGTACTCTCTCTGACTACAACATTCAAAAGGAGTCTACTCTTCATCTGGTGTTG 1078074 Query 115499 AGA 115501 ||| Sbjct 1078075 AGA 1078077 >seq26070 Length=4351986 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| ||||| || ||||| || || || || ||||| ||| |||| || || Sbjct 512596 AAAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCC 512655 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | ||||| || || ||||| ||||| | || |||| Sbjct 512656 TTGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 512715 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| || | ||| ||||| ||| | ||||| | || || | || || Sbjct 512716 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGACGGACGTACTCTGTCTGACTAC 512775 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGA 115501 |||||||| || ||||||||| | ||| | ||||||||| Sbjct 512776 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGA 512814 >seq24834 Length=2526834 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| ||||| || ||||| || ||||| || ||||| ||| | || || || Sbjct 598687 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTTGAGGTTGAACCC 598628 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | ||||| || || ||||| ||||| | || |||| Sbjct 598627 TCGGATACGACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 598568 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| || | ||| ||||| ||| | ||||||| || || | || || Sbjct 598567 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTCTGTCTGACTAC 598508 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGA 115501 ||||||||||| ||||| ||| | ||| | ||||||||| Sbjct 598507 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGA 598469 >seq18140 Length=5205659 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| ||||| || ||||| || || || || ||||| ||| |||| || || Sbjct 3938808 AAAATGCAGATTTTCGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCC 3938749 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | ||||| || || ||||| ||||| | || |||| Sbjct 3938748 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 3938689 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| || | | | ||||| ||| ||||||| || || | || || Sbjct 3938688 CAGCAAAGACTGATCTTTACTGGCAAGCAACCGGAAGATGGACGTACTTTGTCTGACTAC 3938629 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||| || ||||||||| | ||| | ||||||||| | || || || Sbjct 3938628 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 3938579 >seq5696 Length=1770758 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| ||||| || ||||| || ||||| || ||||| ||| |||| || || Sbjct 1423977 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 1424036 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | ||||| || || ||||| ||||| | || |||| Sbjct 1424037 TTGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 1424096 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| || | ||| ||||| ||| | ||||||| || || | || || Sbjct 1424097 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 1424156 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGA 115501 ||||||| | | ||||||||| | ||| | ||||||||| Sbjct 1424157 AACATTC-AGAGGAGTCTACTCTTCATCT-GTGTTGAGA 1424193 >seq27641 Length=16599674 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| |||||| | || ||||||||||||||| || | ||| ||||| ||| | ||| Sbjct 1039127 GATAAGGAAGGCATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAA 1039186 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 || | | || || | || || ||||||||||| ||||||||| | ||| | ||| || Sbjct 1039187 GACGGACATACTTTGTCTGACTACAACATTCAAAAGGAGTCTACTCTTCATCTTGTGCTG 1039246 Query 115499 AGATTGCGAGGAGG 115512 ||| | || || || Sbjct 1039247 AGACTTCGTGGTGG 1039260 >seq16297 Length=2103431 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| ||||| | ||||| || || || || ||||| ||| || | || ||| Sbjct 675079 AAAATGCAGATTTTCATGAAAACCCTTACAGGGAAGACCATCACCCTCAAGGTTGAATCC 675138 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | ||||| || || ||||| ||||| | || |||| Sbjct 675139 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 675198 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGA-TGACAAAACCATGGCCGATTA 115461 ||||||||| | || | ||| ||||| ||| | ||||| ||| || || | || || Sbjct 675199 CAGCAAAGATTGATCTTTGCTGGCAAGCAACTGGAAGACCGAC-GTACTCTGTCTGACTA 675257 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||| ||| ||||||||| | ||| | ||||||||| | || || || Sbjct 675258 CAACATTCGAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 675308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425194071822640