Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq16305 107 2e-18 seq22126 104 2e-17 seq13033 104 2e-17 seq2233 98.7 9e-16 seq16297 95.1 1e-14 seq7161 91.5 1e-13 seq26070 87.8 2e-12 seq17446 87.8 2e-12 seq15423 86.0 6e-12 seq24834 82.4 7e-11 >seq16305 Length=36878 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || |||||| || | | | ||||||||| || || ||||||||||| Sbjct 3040 AGCCACCCCTCAGACGCAGGACCAGGCGCAGGGTCGACTCTTTCTGGATGTTGTAATCAG 3099 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||||| ||| || |||||||||||||| |||| | | ||||||||| | | Sbjct 3100 AAAGAGTGCGGCCGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGAGGG 3159 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| |||||||| || ||| || ||| | | || | || || ||| ||| | Sbjct 3160 GGATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCA 3219 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 3220 CCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 3268 >seq22126 Length=6662745 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131016 CAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCG 131075 ||| ||||| || | || | ||| ||||| || || |||||||| || || |||||| Sbjct 461649 CAAGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAAGGTGCG 461590 Query 131076 CGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTC 131135 | || || ||||| || || || |||| | | ||||||||| |||||||| ||||| Sbjct 461589 CCCATCTTCCAGCTGTTTCCCAGCAAAGATCGATCTCTGCTGGTCAGGAGGGATGCCTTC 461530 Query 131136 TTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGT 131195 |||||| ||| || ||||| | ||| | || || ||| ||||| || ||| Sbjct 461529 TTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCACGGGT 461470 Query 131196 AACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGC 131232 | ||| || || || ||||| || | ||| |||||| Sbjct 461469 GATGGTCTTGCCAGTCAGAGTCTTCATGAAGATCTGC 461433 >seq13033 Length=3880709 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| |||||||| | || | ||| ||||| || || |||||||| || Sbjct 3665182 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 3665241 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| ||||| ||||| ||||| || | || | |||||||||||| || || Sbjct 3665242 GAGCGTGCGGCCATCCTCCAGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGG 3665301 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||| || || ||||| ||| ||| || |||| | ||| | || || ||| ||||| Sbjct 3665302 GATACCCTCCTTGTC-TTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 3665360 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || || || |||||||| Sbjct 3665361 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 3665409 >seq2233 Length=2295209 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 |||| || | || |||||| || | || | ||||||||| || || |||||||| || Sbjct 1388465 AGCCCCCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAG 1388406 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||||| || || |||||||||||||| |||| | | ||||||||| || | Sbjct 1388405 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGG 1388346 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| ||||| || || ||| || ||| | | || | || || | | ||| | Sbjct 1388345 GGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTCCA 1388286 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| ||||| || ||||| || || || ||||| |||||||| Sbjct 1388285 CCTCCAGGGTTACGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1388237 >seq16297 Length=2103431 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | | || ||| | ||| | || ||||||||| |||||||||| || | Sbjct 675308 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTCGAATGTTGTAGTCAGAC 675249 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || || |||||||| || |||| || | ||||| || ||||| Sbjct 675248 AGAGTACGTCGGTCTTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAGGA 675189 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || ||| || ||| | | || | ||||| | ||| || | Sbjct 675188 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGATTCAACC 675129 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || ||| | ||| || || || || ||||| | |||||||||||| Sbjct 675128 TTGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCATGAAAATCTGCAT 675082 >seq7161 Length=8644359 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| ||| |||||||| | || | ||| ||||| || || |||||||| || Sbjct 6018497 GCCACCTCGCTGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 6018556 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| | ||||| ||||| |||| || | || | |||||||||||| || || Sbjct 6018557 GAGCGTGTGGCCATCCTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGG 6018616 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||| || || ||||| ||| ||| || |||| | ||| | || || ||| ||||| Sbjct 6018617 GATACCCTCCTTGTC-TTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 6018675 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || || || |||||||| Sbjct 6018676 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 6018724 >seq26070 Length=4351986 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 || ||| | ||| | || |||||||| ||||||||||| || || || || ||| Sbjct 512811 CAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAGAGTACGTCCGTC 512752 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 || || |||||||| || |||| | | ||||| || ||||| |||||||| || || Sbjct 512751 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 512692 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 ||| || ||| | | || | ||||| || || | |||| ||| | ||| Sbjct 512691 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTCAACCTCGAGGGTGATGGT 512632 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || ||||| |||||||||||||| Sbjct 512631 CTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 512599 >seq17446 Length=896517 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || |||||| || | || | ||||||||| || || ||||||||||| Sbjct 702415 AGCCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAG 702356 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||||| || || |||||||||||||| |||| | | ||||||||| || | Sbjct 702355 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGG 702296 Query 131126 GGATTCCTTCTTTGTC 131141 |||| ||||| || || Sbjct 702295 GGATGCCTTCCTTATC 702280 >seq15423 Length=9779632 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||| | ||||||||||| || || || || || || || |||||||| Sbjct 6864544 GTAGACTCCATCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCA 6864485 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || |||| | | ||||| || ||||| |||||||| || || |||||| ||| Sbjct 6864484 GCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTGGCCTTT 6864425 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | ||||| | || || | |||| ||||| || || || || |||||| Sbjct 6864424 ACATTTTCTAACGTATCCGAGGGTTCAACTTCGAGGGTAATAGTCTTCCCCGTAAGAGTT 6864365 Query 131218 TTTACGAAAATCTGCAT 131234 || || ||||||||||| Sbjct 6864364 TTCACAAAAATCTGCAT 6864348 >seq24834 Length=2526834 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 || ||| | ||| | || |||||||||||||||||||| || || || || || Sbjct 598472 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATC 598531 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 || || |||||||| || |||| | | ||||| || ||||| |||||||| || || Sbjct 598532 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 598591 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 ||| || ||| | | || ||||| | || || | || | ||| | ||| Sbjct 598592 CTGGATCTTGGCCTTTACATTTTCTGTCGTATCCGAGGGTTCAACCTCAAGGGTGATGGT 598651 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || ||||| |||||||||||||| Sbjct 598652 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 598684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471842155572480