Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq13033 98.7 9e-16 seq7161 91.5 1e-13 seq22126 87.8 2e-12 seq19391 87.8 2e-12 seq9996 86.0 5e-12 seq24317 84.2 2e-11 seq18305 84.2 2e-11 seq17271 82.4 7e-11 >seq13033 Length=3880709 Score = 98.7 bits (108), Expect = 9e-16 Identities = 167/238 (70%), Gaps = 7/238 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | || || ||| | | Sbjct 3665409 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 3665350 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || |||| |||| ||| ||||| || || || ||||||||| Sbjct 3665349 GACACCATTGAG--AATGTCAAAGCCAAAATTCAA-GACAAGGAGGGTATCCCACCTGAC 3665293 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || ||||| |||||||| | || |||| ||||| | || ||| Sbjct 3665292 CAGCAGCGTCTGATATTTGCTGGCAAACAGCTGGAGGATGGCCGCACGCTCTCAGACTAC 3665233 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATT 25233 || || || ||||| ||||| || || | ||||| | || |||| || |||||| Sbjct 3665232 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGGTGG-CATTATT 3665176 >seq7161 Length=8644359 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | || || ||| | | Sbjct 6018724 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 6018665 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || |||| |||| ||| ||||| || || || ||||||||| Sbjct 6018664 GACACCATTGAG--AATGTCAAAGCCAAAATTCAA-GACAAGGAGGGTATCCCACCTGAC 6018608 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || |||||| ||||||| | || |||| | ||| | || ||| Sbjct 6018607 CAGCAGCGTCTGATATTTGCCAGCAAACAGCTGGAGGATGGCCACACGCTCTCAGACTAC 6018548 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| ||||| || || | ||||| Sbjct 6018547 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGCT 6018513 >seq22126 Length=6662745 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||| ||| || || | |||||| |||| || || ||||||| || || ||| | Sbjct 461428 ACAACGCAGATCTTCATGAAGACTCTGACTGGCAAGACCATCACCCGTGAGGTCGAGCCC 461487 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||| || ||| | ||| ||| ||| ||||||||||| || || |||||| Sbjct 461488 AGTGACACCATTGAGAACGTCAAGGCAAAGATCCAGGACAAAGAAGGCATCCCTCCTGAC 461547 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | || ||||| || ||||| | ||||||| ||||| || || ||| Sbjct 461548 CAGCAGAGATCGATCTTTGCTGGGAAACAGCTGGAAGATGGGCGCACCTTGTCTGACTAC 461607 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 || || || ||||| ||||| || || Sbjct 461608 AACATCCAGAAAGAGTCCACCCTGCA 461633 >seq19391 Length=1377628 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||| || || ||||||| | ||||| ||| | | Sbjct 1322583 ATGCAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACCCTTGAAGTCGAGCCCAGT 1322642 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||| | ||| | || |||| |||| ||| ||||| ||||| || |||||||| Sbjct 1322643 GACATCACTGAG--AATGTCAAAGCCAAAATTCAA-GACAAGGAAGGTATCTCACCTGAC 1322699 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| | | || |||||||||||| | | || |||| |||||| | || ||| Sbjct 1322700 CAACAGTGTCTGATATTTGCCGGCAAATAGCTGGAGGATGGCCGCACTCTCTCAGACTAC 1322759 Query 25176 AATATTCAAAAAGAATCCACGCT 25198 || || || || || ||||| || Sbjct 1322760 AACATCCAGAAGGAGTCCACCCT 1322782 >seq9996 Length=19681183 Score = 86.0 bits (94), Expect = 5e-12 Identities = 165/238 (69%), Gaps = 9/238 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| | ||||| ||||| | || || || ||||||| | || || ||| | | Sbjct 16335315 ATGCAGGTGTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 16335256 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || |||| |||| ||| ||||| ||||| || ||||||||| Sbjct 16335255 GACACCATTGAG--AATGTCAAAGCCAAAATTCAA-GACAAGGAAGGTATCCCACCTGAC 16335199 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || |||| | || ||||| ||||||| | || |||| |||| || || ||| Sbjct 16335198 CAGCAGCATCTGATATTTGCTAGCAAACAGCTGGAGGATGGCCGCA--GTCTCAGACTAC 16335141 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATT 25233 || || || ||||| ||||| || || | ||||| | || |||| || |||||| Sbjct 16335140 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGTGAGGTGG-CATTATT 16335084 >seq24317 Length=2447881 Score = 84.2 bits (92), Expect = 2e-11 Identities = 168/247 (68%), Gaps = 14/247 (6%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | || || ||| | | Sbjct 1085346 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 1085287 Query 25059 GACACTATC---------GAGTCA---CTGAAGCAAAAAATCACTGACAAAGAAGGGATT 25106 |||||||| | |||| | |||| |||| ||| ||||| || || || Sbjct 1085286 GACACTATATTGAGAATAGTGTCATGACCAAAGCCAAAATTCAA-GACAAGGAGGGTATC 1085228 Query 25107 CCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTG 25166 ||||||||||| ||||| | || |||||||||||||| | || ||| ||||| | Sbjct 1085227 CCACCTGACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAGGATAGCCGCACGCTC 1085168 Query 25167 GGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 || ||||| || || ||||| ||||| || || | ||||| | || |||| || Sbjct 1085167 TCAGACTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGTGAGGTGG- 1085109 Query 25227 AATTATT 25233 |||||| Sbjct 1085108 CATTATT 1085102 >seq18305 Length=10871756 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||| | || ||||| |||||| | || || || ||||||| | || || || | | Sbjct 4253666 ATGTAGATCTTTGTGAAGACTCTCACAGGCAAGACCATCACCCTTGAGGTCAAGACTAGT 4253607 Query 25059 GACACTATCGAGTCACTGA-AGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | | ||| |||| ||| ||||| || || || ||||||||||| Sbjct 4253606 GACACCATTGAGAATGTCAGAGCCAAAATTCAA-GACAAGGAGGGTATCCCACCTGACCA 4253548 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || |||||||||||||| | || ||| ||||| | || ||||| Sbjct 4253547 GCAGTGTCTGATGTTTGCCGGCAAACACCTGGAGAATGGCTGCACTCTCTCAGACTACAA 4253488 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| ||||| || || | ||||| Sbjct 4253487 CATCCAGAAAGAGTCCACCCTGCACCTGGTGCT 4253455 >seq17271 Length=5220743 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| || || || || ||| ||||||| || ||||||| | || || ||| | Sbjct 580108 ACAATGCAGATCTTCGTGAATACTCTGACCGGCAAGACCATCACCCTTGAGGTTGAGCCC 580167 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||| | ||| | ||| ||| ||| ||||| ||||| || || |||||| Sbjct 580168 AGTGACACCACTGAGAATGTCAAGGCAAATATCCAGGACAAGGAAGGCATCCCTCCTGAC 580227 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155 |||||| || | || ||| | || ||||| | ||||||| Sbjct 580228 CAACAGAGGTTGATCTTTTCTGGGAAACAGCTGGAAGATG 580267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433175257567430