Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq12132 248 1e-60 seq22719 221 1e-52 seq23499 219 5e-52 seq27380 102 9e-17 seq24714 95.1 1e-14 seq25381 93.3 5e-14 >seq12132 Length=2475592 Score = 248 bits (274), Expect = 1e-60 Identities = 524/777 (67%), Gaps = 6/777 (1%) Strand=Plus/Minus Query 92930 GCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACAGGT 92989 || ||||| || ||||| || ||| | | || ||||| || | || ||||| Sbjct 57163 GCCACAAACTCAATGTATTGCTTCATTAGAGTGCAGTTCATCCCAATGAGCTTCACAGGC 57104 Query 92990 AGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTATTACT 93049 | ||| || || | ||| || | || || ||| || | | | ||||| |||| Sbjct 57103 AAAGCCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCATTGATAATTATTTCGCATACT 57044 Query 93050 CTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGT 93109 || | || |||||| ||||| | | ||| |||| | ||| ||||| || ||| Sbjct 57043 CTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATCAGGCAAGCAAAATCACAGTGT 56984 Query 93110 AAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGGTAACAGTCCTCG 93168 ||||| || |||| || || || | |||| ||||| | || || | ||||||||| Sbjct 56983 AAACCCTCATCTC-TGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCG 56925 Query 93169 TTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGC 93228 |||||||||||| ||||| || |||||| ||||||||| || || |||||||| || || Sbjct 56924 TTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGC 56865 Query 93229 AAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCA 93288 ||| || || ||||| || | | || || | ||||| || ||||| Sbjct 56864 AAAGGCTACGCG-CGTTCACCATAGGTAGCCTGTTTGTCCCCAATCCAGCGCAAGGCCCA 56806 Query 93289 ATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTC 93348 ||| | || ||| | |||||| | ||||| || || || || || | || | || Sbjct 56805 ATCTGACTT---CTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCCCTTTC 56749 Query 93349 GTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTC 93408 || | |||| |||||| || || || | ||| ||||||||||||||| | || || Sbjct 56748 GTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTC 56689 Query 93409 CATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAA 93468 ||| ||||||||||| || |||||||| | ||||| || ||||| |||||||| ||| Sbjct 56688 CATGGCAATTTGGAAACCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGTTAAA 56629 Query 93469 TCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATG 93528 || ||| || | |||||||| ||||| |||| ||||||||| ||||||| | || Sbjct 56628 TCGCTCCACCAAGTTTTCATTTACTATGTCATCACTTGCTGCAAATAAAGCCAGAACGTG 56569 Query 93529 CTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAG 93588 |||||| | | |||| || || || ||||| | | | || || || || Sbjct 56568 GGATATAAAGTATCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCAAATGTCCTTGGACAG 56509 Query 93589 ATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTC 93648 || || || ||| | ||||| || || || || || || || ||||| | ||| || | Sbjct 56508 CTCCACCTCCTCGGCGGTCCAGAAGGAGGCCTCCGCCTTCTTATACATGTGCCAGATACC 56449 Query 93649 TTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || || | | || || |||||||| || ||||| ||| | || | |||||| Sbjct 56448 GTGGTACTCGACGGGGAAAATGACAAAGCGGCGCGGGTTTTCTCTCAGCAGCGGCTC 56392 >seq22719 Length=8987742 Score = 221 bits (244), Expect = 1e-52 Identities = 525/790 (66%), Gaps = 19/790 (2%) Strand=Plus/Minus Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 |||| ||| || || ||||| || ||||| || ||| | | |||||||| || | Sbjct 8555177 ATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATG 8555118 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 || ||||| | || || || | ||| || | || || ||| || | | | Sbjct 8555117 AGCTTCACAGGCAAGGCCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCATTCATAATT 8555058 Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 |||||| ||||||| | || |||||| ||||| | | ||| |||| | ||| ||| Sbjct 8555057 ATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTATGTGTTTGAACATCAGGCAAGCA 8554998 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGG 93156 || || |||||||| || |||| || || || | |||| ||||| | || || Sbjct 8554997 AAATCACAGTGTAAACCCTCATCTC-TGCTAATAAGTTCATTAGAAAATGTGAGGCCAGG 8554939 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | ||||||||||||||||||||| ||||| || |||||| ||||||||| || || || Sbjct 8554938 CATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCC 8554879 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 |||||| || ||||| || |||| ||||| || | | || || | ||||| Sbjct 8554878 TTCCACTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCA 8554819 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 || |||||||| || || |||| | |||||| | ||||| || || || || || Sbjct 8554818 GCGCAAGGCCCAATCTGCCTTCTTCTGGACACAAGGCATCGTTTCAATGGCATTGAAAAG 8554759 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | || | |||| | |||| |||| | || || || | | | |||||||||||| Sbjct 8554758 AAATTCCCTTTCGTTGGGATCTTTTATGCAAGTGTCAATAAGGAAACTATACATTTCAGA 8554699 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 ||| | || ||||| ||||| |||| | | ||| || ||||| || Sbjct 8554698 ATGTATGTTTTCCATGGCAAT--------------AACAGCGGGTTTCTGTAATCTGAAC 8554653 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 |||||| |||| ||| || | |||||||| ||||| |||| ||||||||| || Sbjct 8554652 TTCTTGGCTAAATTGCTCCACCAAGTTTTCATTTACTATGTCATCACTTGCTGCAAAGAA 8554593 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATA 93575 ||||| | || |||||| | | |||| | || || ||||| | | || | Sbjct 8554592 AGCCAGAACGTGGGATATAAAGTATCTCTCCTTGGGCTTCAGGGATTCCCAGTGCCGA-A 8554534 Query 93576 GATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACA 93635 || || | || || || || ||| | ||||| || || || || || || || |||| Sbjct 8554533 TGTCCTTGAACAGGTCCACCTCCTCGGCGGTCCAGAAGGAGGCCTCCGCCTTCTTATACA 8554474 Query 93636 TATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTA 93695 | | ||| || | || || | || || || |||||||| | | ||||| ||| ||| Sbjct 8554473 TCTGCCAGATATTGTGGTACTCGATGGGGAAAATGACAAAGCCACGCGGGTTTTCTCTTA 8554414 Query 93696 GTAACGGCTC 93705 | | |||||| Sbjct 8554413 GCAGCGGCTC 8554404 >seq23499 Length=2348749 Score = 219 bits (242), Expect = 5e-52 Identities = 358/513 (70%), Gaps = 2/513 (0%) Strand=Plus/Plus Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 |||||| |||| || | || |||||| ||||| | ||| |||| | ||| ||| Sbjct 2215857 ATTTCTCTTACCCTCTCCTCTGATGGTTTGTGTACTGGGTGTTTGAACATCAGGCAAGCA 2215916 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGG 93156 || || |||||||| || |||| || || || | |||| ||||| | || || Sbjct 2215917 AAATCACAGTGTAAACCCTCATCTC-TGCTAATAAGTTCATTAGAAAATGTGAGGCCAGG 2215975 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | ||||||||||||||||||||| ||||| || |||||| ||||||||| || || || Sbjct 2215976 CATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAAATGCC 2216035 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 |||||| || ||||| || || | |||||| || | | | || | |||| Sbjct 2216036 TTCCACTGCAGCAAAGGCTACGACACGTTCACCATAGGTAACCTCTTTGTCCCCAGTCCA 2216095 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 | || ||||| || || || ||||| | |||||| | ||||| | || || || || Sbjct 2216096 GTGCAAGGCCCAGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAACGGCATTGAAGAG 2216155 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | || | ||| | |||| |||||| || || || | ||| |||||||||||| Sbjct 2216156 AAATTCCCTTTCGCTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGA 2216215 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 ||| | || ||| | |||||||||||||| |||||||| | ||||| || ||||| || Sbjct 2216216 ATGTATGTTTTCCCTGGCAATTTGGAATCCATAGAAACAGCGGGCTTCTGTAATCTGAAC 2216275 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 ||||| ||||| ||| || | |||||||| ||||| || | |||||||| || Sbjct 2216276 CTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCCTTACTCGCTGCAAAGAA 2216335 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATC 93549 ||||| | || |||||| | | |||| || Sbjct 2216336 AGCCAGAACGTGGGATATAAAGTCTCTCTCCTC 2216368 >seq27380 Length=10165399 Score = 102 bits (112), Expect = 9e-17 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 93347 TCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTC 93406 |||| | |||| |||||| || || || | |||| ||||||||||||||| | || Sbjct 7668613 TCGTTGGGATCTTTTATGTAAGTGTCAATAAGCAGACTATACATTTCAGAATGTATGTTT 7668672 Query 93407 TCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAA 93466 ||||| ||||||||||| || |||||||| | ||||| || ||||| |||||||| | Sbjct 7668673 TCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTA 7668732 Query 93467 AATCTCTCTAC 93477 |||| ||| || Sbjct 7668733 AATCGCTCCAC 7668743 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 ||||| | || || | ||||||||||||||||||||| ||||| || |||||| |||| Sbjct 7666540 AATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCA 7666599 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||||| || || |||||||| || ||||| || || | ||||| Sbjct 7666600 GAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACGACCCGTTC 7666643 >seq24714 Length=5211462 Score = 95.1 bits (104), Expect = 1e-14 Identities = 274/420 (65%), Gaps = 14/420 (3%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||||| | || | | ||||| | |||||||||| || ||||| || || Sbjct 5055840 TCATTGGAAAATGTGAGGCCAGACATCAGTCATTGTTTCTTGAGGCAGAATATCGATGCG 5055899 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA 93253 ||| ||||||| | || | ||||| | ||| ||| || ||| | |||| || Sbjct 5055900 AAAGAACCAGAAGAGAAGGTGCCTTCTATGGC---AAAGGCTGCAACAAGTTCTCCATGG 5055956 Query 93254 TTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGT 93313 | || || | ||||| || |||||||| || | | | | | |||||| Sbjct 5055957 GTAGCATCTTTGTTCACAATCCAACACAAGGCCCAATCTGCCTCCTCCCTGACACAAGGC 5056016 Query 93314 AGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTA---TGTA 93370 | |||| || || || || || | || || | | | || | || ||| Sbjct 5056017 ATCCTTTCAATGGCATTGAAGAGAAATTCCATTTCTT-----TGTTGTCTTTAACATGTG 5056071 Query 93371 TCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAG 93430 || || || ||| || ||| ||||||| || || ||||| ||||||||||| || ||| Sbjct 5056072 TCAATAAAGAGATTATCCATGTCAGAATAGATGTTTTCCATAGCAATTTGGAAGCCATAG 5056131 Query 93431 AAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTG 93490 || || | ||| || ||| |||||||| |||| ||| || | |||| || Sbjct 5056132 AAGCA---GGTTTCTGTAGCCTGAACTTCTTGGACAAATTGCTCCACCAAGTTTTTATCA 5056188 Query 93491 ACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCA 93550 ||| | |||||| |||||||||| |||| || |||| |||||||| | | || ||| Sbjct 5056189 ACTGTGCCATCGCATGCTGCAAAGAAAGTCAGAATATTGGATATAAAATATCTTTCCTCA 5056248 >seq25381 Length=27760200 Score = 93.3 bits (102), Expect = 5e-14 Identities = 104/138 (75%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 93385 ATACATTTCAGAATGGACATTCTCC-ATTGCAATTTGGAATCCGTAGAAACATCTAGCTT 93443 ||| | ||||||||||| | ||| || ||||||||||| || |||||||| |||| Sbjct 5108553 ATATACTTCAGAATGGAGGGTTTCCCATAGCAATTTGGAAGCCATAGAAACAGTGGGCTT 5108494 Query 93444 CCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGG 93503 | || | ||| ||||||| |||| |||||| |||||||| ||||| ||||| | Sbjct 5108493 CTGTAAGCTGAGCTTCTTGGCTAAATTGCTCTACCTAGTTTTCATTTACTATGCCATCAG 5108434 Query 93504 ATGCTGCaaaaaaaGCCA 93521 |||| ||| |||||||| Sbjct 5108433 TTGCTTCAACAAAAGCCA 5108416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556659480899280