Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq12132 179 7e-40 seq23499 176 9e-39 seq22719 149 1e-30 seq27380 84.2 4e-11 >seq12132 Length=2475592 Score = 179 bits (198), Expect = 7e-40 Identities = 574/874 (66%), Gaps = 35/874 (4%) Strand=Plus/Plus Query 42286 TCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCG 42345 ||||| |||| | |||||| |||||| ||||||||| || |||| ||||||||||| Sbjct 56438 TCGAGTACCACGGTATCTGGCACATGTATAAGAAGGCGGAGGCCTCCTTCTGGACCGCCG 56497 Query 42346 AGGAGATTGACCTGGCCAAGGACAC--GGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403 ||||| | || ||| ||||||||| ||| |||||| || ||| || ||| | Sbjct 56498 AGGAGGTGGAGCTGTCCAAGGACATTTGGCA--CTGGGAATCCCTGA---AGCCCGAGGA 56552 Query 42404 GTTTTTCCTCAAAA---ACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGA 42460 | | | | | | || | ||||| || || || || ||| | |||||| ||||| Sbjct 56553 GAGATACTTTATATCCCACGTTCTGGCTTTATTTGCAGCAAGTGATGACATAGTAAATGA 56612 Query 42461 GAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTAC 42518 ||| ||| | || | |||| || ||| ||| || || ||||| ||||| Sbjct 56613 AAACTTGGTGGAGCGATTTAACCAAGAAGTTCAGATTACA--GAAGCCCGCTGTTTCTAT 56670 Query 42519 GGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---AC 42575 || ||||| || ||||| || ||| | || ||||| |||| | || || | || Sbjct 56671 GGTTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTAT---AGTCTCCTTATTGAC 56727 Query 42576 ACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCC 42635 || ||||| |||||| ||| | | || ||||| ||||| || |||||||| Sbjct 56728 ACTTACATAAAAGATCCCAACGAAAGGGAATTTCTCTTCAATGCCATTGAAACGATGCCT 56787 Query 42636 TGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTC 42695 || |||||||| | || ||||| | |||||| | | | || || | Sbjct 56788 TGTGTCAAGAAGT---CAGATTGGGCCTTGCGCTGGATTGGGGACAAACAGGCTACCTAT 56844 Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || || | || ||||||||| | || || || ||||||||||| || || | || || Sbjct 56845 GGTGA-ACGCGCGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCA 56903 Query 42756 TCCATCTTCTGGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 ||||| |||||||||||| | ||| | |||||| || ||||| || || || ||||| Sbjct 56904 TCCATATTCTGGCTCAAGAAACGAGGACT-GATGCCTGGCCTCACATTTTCTAATGAACT 56962 Query 42815 CATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCT 42874 || ||||| || ||||| | || | || ||||| ||||| ||||| | ||||| Sbjct 56963 TATTAGCAGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTC---AAACACCT 57019 Query 42875 CAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGA 42934 ||||| || || ||||| | || | | || || | | || || ||| || Sbjct 57020 AGTACACAAACCATCAGAGGAGAGAGTATGCGAAATAATTATCAATGCTGTTCGGATAGA 57079 Query 42935 GAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCAT 42994 ||||||||||||| || | |||| ||| || | || |||||| | || || Sbjct 57080 ACAGGAGTTCCTCACTGAGGCTTTGCCTGTGAAGCTCATTGGGATGAACTGCACTCTAAT 57139 Query 42995 G-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGA--TGGGTCTCAGCCG 43051 | |||| ||||| ||| || || | | || | ||| || ||||| | ||| Sbjct 57140 GAAGCAA-TACATTGAGTTTGTGGCAGGCAGACT--TATGCTGGAACTGGGTTTTAGCAA 57196 Query 43052 CCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGAC 43111 | | || | || || |||||||||||||| || || |||| || |||| Sbjct 57197 GGTTTTCAGAGTAGAGAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGATAGAC 57256 Query 43112 CAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||| || |||||| | || | ||| || ||| Sbjct 57257 TAACTTCTTTGAGAAGAGAGTAGGCGAGTATCAG 57290 >seq23499 Length=2348749 Score = 176 bits (194), Expect = 9e-39 Identities = 446/665 (67%), Gaps = 35/665 (5%) Strand=Plus/Minus Query 42317 GAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACA--CGGCC 42374 ||||||| || |||| |||||||||||||||| | |||||| || |||||| |||| Sbjct 2216447 GAAGGCGGAGGCCTCCTTCTGGACCGCCGAGGAGGTGGACCTGTCCGAGGACATTCGGCA 2216388 Query 42375 GGCTGGGAGTCACTGT---CTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTC 42431 |||||| || ||| | ||| | | | ||| | | | | | ||||| ||| Sbjct 2216387 --CTGGGAATCCCTGAAGCCCGAGGAGAGAGACTTTATATCCCA---CGTTCTGGCTTTC 2216333 Query 42432 TTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTG 42491 || || || | | |||||||| ||||| ||| ||| | || | ||||||| Sbjct 2216332 TTTGCAGCGAGTAAGGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGCCAAGAGGTT 2216273 Query 42492 CAG--TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACT 42549 ||| ||| || || ||||| ||||| || ||||| || |||| || ||| | || | Sbjct 2216272 CAGATTACA--GAAGCCCGCTGTTTCTATGGATTCCAAATTGCCAGGGAAAACATACATT 2216215 Query 42550 CTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGTAACG 42606 |||| |||| | || || | |||| ||||| |||||| |||| || | Sbjct 2216214 CTGAAATGTAT---AGTCTCCTTATTGACACTTACATAAAAGATCCC----AGCGAAAGG 2216162 Query 42607 GG----CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | || ||||| ||| | || |||||||| || ||||||||||||| |||||||| Sbjct 2216161 GAATTTCTCTTCAATGCCGTTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGACTGGGCC 2216102 Query 42663 CTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722 | |||||| | | || | || | || || | | ||||||||| | || Sbjct 2216101 TTGCACTGGACTGGGGACAAAGAGGTTACCTATGGTGAACGTGTCGTAGCCTTTGCTGCA 2216042 Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-CAGAAGGT 42781 || || ||||| ||||| || || | || || ||||| |||||||||||| | ||| Sbjct 2216041 GTGGAAGGCATTTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCTCAAGAAACGAGGA 2215982 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 | |||||| || ||||| || || || ||||| || ||||| || ||||| | || | Sbjct 2215981 CT-GATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGATGAGGGTTTACACTG 2215923 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAG-GCACAAGCCCTCGAAGGAGCGGG 42900 || ||||| ||||| ||||| | |||| ||| ||||| || || ||||| ||| Sbjct 2215922 TGATTTTGCTTGCCTGATGTTC---AAACACC-CAGTACACAAACCATCAGAGGAGAGGG 2215867 Query 42901 TCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGC 42960 | | | || || | | || || | | ||| ||||||||||||| || | ||| Sbjct 2215866 TAAGAGAAATAATTATCAATGCTGTTCGGTTAGAGCAGGAGTTCCTCACTGAGGCCTTGC 2215807 Query 42961 CCGTG 42965 | ||| Sbjct 2215806 CTGTG 2215802 >seq22719 Length=8987742 Score = 149 bits (164), Expect = 1e-30 Identities = 562/870 (65%), Gaps = 35/870 (4%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 |||||| |||| | |||||| ||||| ||||||||| || |||| |||||||||| Sbjct 8554449 ATCGAGTACCACAATATCTGGCAGATGTATAAGAAGGCGGAGGCCTCCTTCTGGACCGCC 8554508 Query 42345 GAGGAGATTGACCTGGCCAAGGACA--CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAA 42402 |||||| | |||||| |||||||| |||| |||||| || ||| || || | Sbjct 8554509 GAGGAGGTGGACCTGTTCAAGGACATTCGGCA--CTGGGAATCCCTGAAGCCCAAGGAGA 8554566 Query 42403 AGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGA 42462 | || | || | ||||| ||||| || || ||| | |||||| ||||| | Sbjct 8554567 GATACTTTATATCCCACGTTCTGGCTTTCTTTGCAGCAAGTGATGACATAGTAAATGAAA 8554626 Query 42463 ACCTGGCC-ACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTACG 42519 || ||| | || || | |||| || ||| ||| || | ||||| | Sbjct 8554627 ACTTGGTGGAGCAATTT-AGCCAAGAAGTTCAGATTACA--GAAACCCGCTGTT------ 8554677 Query 42520 GCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGT 42579 || ||||| || ||| | || ||||| |||| || | |||| | Sbjct 8554678 --------ATTGCCATGGAAAACATACATTCTGAAATGTATAGTTTCCTTATTGACACTT 8554729 Query 42580 ACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCA 42639 ||| |||||| ||| | | || ||||| ||||| || |||||||| || Sbjct 8554730 GCATAAAAGATCCCAACGAAAGGGAATTTCTTTTCAATGCCATTGAAACGATGCCTTGTG 8554789 Query 42640 TCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCG 42699 || |||||||||| || ||||| | |||||| | | || || || | || | Sbjct 8554790 TCCAGAAGAAGGCAGATTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCTACCTATGGTG 8554849 Query 42700 AGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCA 42759 | | | ||||||||| | || || || ||||||||||| || || | || || |||| Sbjct 8554850 AACGCGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCA 8554909 Query 42760 TCTTCTGGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATC 42818 | |||||||||||| | ||| | |||||| || ||||| || || || ||||| || Sbjct 8554910 TATTCTGGCTCAAGAAACGAGGACT-GATGCCTGGCCTCACATTTTCTAATGAACTTATT 8554968 Query 42819 AGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGG 42878 ||||| || ||||| | || | || ||||| ||||| ||||| | ||| | Sbjct 8554969 AGCAGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTC---AAACACATAGTA 8555025 Query 42879 CACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAG 42938 ||||| || || ||||| | || | | || || | | | || || ||| || || Sbjct 8555026 CACAAACCATCAGAGGAGAGAGTAAGAGAAATAATTATGAATGCTGTTCGGATAGAACAG 8555085 Query 42939 GAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATG-TG 42997 ||||||||||| || | |||| ||| || | || ||||| | || ||| | Sbjct 8555086 GAGTTCCTCACTGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCACTCTAATGAAG 8555145 Query 42998 CAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGA--TGGGTCTCAGCCGCCTC 43055 ||| ||||| ||| || || ||| || | ||| || ||||| | ||| | Sbjct 8555146 CAA-TACATTGAGTTTGTGGCAGACAGACT--TATGCTGGAACTGGGTTTTAGCAAGGTT 8555202 Query 43056 TACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAAC 43115 | || | || || | |||||||||||| || || |||| || ||||| ||| Sbjct 8555203 TTCAGAGTAGAGAATCCATTTGCCTTTATGGAGAATATTTCACTGGAAGGAAAGACTAAC 8555262 Query 43116 TTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 || || |||||| | || | ||| || ||| Sbjct 8555263 TTCTTTGAGAAGAGAGTAGGCGAGTATCAG 8555292 >seq27380 Length=10165399 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| | || || || ||||||||||| || || | || || ||||| |||||| Sbjct 7666634 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGG 7666575 Query 42768 CTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| | ||| | |||||| || ||||| || || || ||||| || ||||| || Sbjct 7666574 CTCAAGAAACGAGGACT-GATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGA 7666516 Query 42827 CGAGG 42831 |||| Sbjct 7666515 TGAGG 7666511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943997797770720