Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq12486 147 2e-30 seq16616 102 7e-17 >seq12486 Length=6174982 Score = 147 bits (162), Expect = 2e-30 Identities = 283/414 (68%), Gaps = 4/414 (1%) Strand=Plus/Plus Query 20171 AGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCG 20230 |||||||| || || | ||| || || ||||||||||| || || | ||| || || Sbjct 2654329 AGTGGCTCGATGTGATTCAGGTAAATATGTGCATCTCCCAAAGTATGTACAAAGTCACCC 2654388 Query 20231 GGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTA 20290 || | || || || | || || | ||| || | | |||| |||||||| ||||| Sbjct 2654389 GGCTTCAGGCCCGTGATGTGCGCGATCATGTACATGAGCAGGGCCTAGCTGGCGATGTTG 2654448 Query 20291 AAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCG 20350 ||||| || || | || ||||||||||| | ||| |||||||| ||||| |||||||| Sbjct 2654449 AAAGGCACACCTAGGCCGATGTCTCCCGATCGCTGGTACAGCTGGCAGGACAGCTCACCA 2654508 Query 20351 TCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCC 20410 | | || || || || || | || || || || |||||||||| | | || Sbjct 2654509 TTCACCACTTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAGAGGAAGATCT 2654568 Query 20411 GCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCC 20470 || ||||| | ||| | ||||||||||| || | || || |||| || || Sbjct 2654569 CTTGGATTCCAAGTGCACGTGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCA 2654628 Query 20471 A-CAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTA 20529 | || | | | || |||||||| || | |||| ||| || | |||| || || Sbjct 2654629 ATCACTCTTTG-CAGTTGGTCAACTCCTTTTCCTGAATAATCTGAATCCATATC--TCTA 2654685 Query 20530 CGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTC 20583 | |||||||| |||||||| ||||| || ||||| || ||||| ||||| || Sbjct 2654686 TTCTGCCCCAAAATGCCTCCATTGGAAGCCATAAACTGGGCCCAAGTCCCCTTC 2654739 Score = 123 bits (136), Expect = 2e-23 Identities = 329/500 (66%), Gaps = 2/500 (0%) Strand=Plus/Plus Query 20323 CTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACA 20382 ||| |||||||| ||||| |||||||||| | || || || || || | || || Sbjct 331988 CTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACTTAGAACTGGCAGAGGGCATGGCA 332047 Query 20383 GGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCT 20442 || || |||||||||| | | || || ||||| || ||||| ||||||||||| Sbjct 332048 TGGAGGCAGCGCCATCAGAGGAAGATCTCTTGGATTCCAAGCGCACATGATGATTCTTCT 332107 Query 20443 ATCGTGCGGATTATTTTTTATTAAATCCA-CAATGTACGACAATTGGTCAAACCCCTGGC 20501 || | || || |||| || || | || | | | || |||||||| || || | Sbjct 332108 GTCATCAGGGTTGGTTTTGATGGTGTCAATCACTCTTTG-CAGTTGGTCAACTCCTTGTC 332166 Query 20502 CTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGT 20561 ||| ||| || | |||| || ||| | |||||||| |||||||||||||| || | Sbjct 332167 CTGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCAT 332226 Query 20562 AAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGCCAGGAACTCCC 20621 |||| || ||||| ||||| || |||| | | || | |||| || || | Sbjct 332227 AAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTATCCAGAAAGTCTC 332286 Query 20622 TGGAGCCATTTTTGTCCCATATCTTGACTCCTGTTCTTGAAAGCTCCCTGGAGTCAGTAC 20681 ||| ||||| ||||| || || ||||| | || ||||| | | | || Sbjct 332287 GGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGG 332346 Query 20682 TCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGG 20741 ||||| | |||||| |||| ||| | || || || ||| |||| | | || | Sbjct 332347 ATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCTTCCAGAACAGATGTTCGGTTG 332406 Query 20742 TTAGTAAGGGAAAGTGGTCCCGCAGACTATACCTGGCCTGCATGCCAAATAGAGAGAGGG 20801 | || | ||||| | || | | | || || | |||||| ||| || | || |||| Sbjct 332407 TCAGCAGAGGAAATTCATCTCTCGGGCTGTAGCGCGCCTGCCTGCAGAACACCGACAGGG 332466 Query 20802 TGCCTATGCCGGTGCGGTCG 20821 | || |||||||||||||| Sbjct 332467 TCCCGGTGCCGGTGCGGTCG 332486 >seq16616 Length=7972016 Score = 102 bits (112), Expect = 7e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || || | ||| || || | |||| |||||||||||||| ||||| || || | ||| Sbjct 2012195 TGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGCACACCTAGGCCC 2012254 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 ||||||||||| ||||| |||||||| || || |||||||||| | ||||| || || Sbjct 2012255 ATGTCTCCCGATCTCTGGTACAGCTGGCAAGACAGCTCACCGTTCACCACATAGAACTGG 2012314 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 || | || || || || |||||||||| Sbjct 2012315 CAGAGGGCATGGCATGGAGGCAGCGCCATCA 2012345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441213232698480