Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq24317 84.2 2e-11 seq13033 82.4 6e-11 seq7161 82.4 6e-11 >seq24317 Length=2447881 Score = 84.2 bits (92), Expect = 2e-11 Identities = 167/242 (69%), Gaps = 19/242 (8%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| ||| ||||||||||| || || ||| ||| ||||| |||||||| |||| Sbjct 1085109 CCACCTCACAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 1085168 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || ||| || |||| || ||||||||||||||||| |||||||| || || Sbjct 1085169 AGCGTGCGGCT-ATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 1085227 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTA---TCAGTAGATTC 34076 | | ||| |||| | | | |||| |||| ||| | |||||| ||| || | | Sbjct 1085228 GATACCCTCCTTGT-CTTGAATTTTGGCTT--TGGTCATGACACTATTCTCAATATAGTG 1085284 Query 34077 GCA-----TTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGC 34125 || |||||| || || || || || || || || ||||||||||| ||| Sbjct 1085285 TCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGC 1085344 Query 34126 AT 34127 || Sbjct 1085345 AT 1085346 >seq13033 Length=3880709 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| ||| ||||||||||| || || ||| ||| ||||| |||||||| |||| Sbjct 3665183 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 3665242 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| || ||||| ||||||||||| |||||||| || || Sbjct 3665243 AGCGTGCGGCCATCCTCCAGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGGG 3665302 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATTCG 34077 | | ||| |||| | | | |||| |||| || | || || | ||| | | ||| Sbjct 3665303 ATACCCTCCTTGT-CTTGAATTTTGGCTT--TGACATTCTCAATGGTGTCACTGGGCTCG 3665359 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || || || || || || || ||||||||||| ||||| Sbjct 3665360 ACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 3665409 >seq7161 Length=8644359 Score = 82.4 bits (90), Expect = 6e-11 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| | | ||||||||||| || || ||| ||| ||||| |||||||| |||| Sbjct 6018498 CCACCTCGCTGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 6018557 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | ||| || | || |||| || |||| |||||||||||| |||||||| || || Sbjct 6018558 AGCGTGTGGC-CATCCTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGG 6018616 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATTC 34076 | | ||| |||| | | | |||| |||| || | || || | ||| | | || Sbjct 6018617 GATACCCTCCTTGT-CTTGAATTTTGGCTT--TGACATTCTCAATGGTGTCACTGGGCTC 6018673 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || | || || || || || || || || ||||||||||| ||||| Sbjct 6018674 GACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 6018724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396922440715444