Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq13033 86.0 6e-12 seq15423 84.2 2e-11 >seq13033 Length=3880709 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||||| |||| || | || | | | ||||| || || ||||||||||| Sbjct 3665182 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 3665241 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||| || ||||| || | | | || |||||||| ||||| || || Sbjct 3665242 GAGCGTGCGGCCATCCTCCAGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGG 3665301 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| |||| | ||| | | || | |||||| | | ||| | Sbjct 3665302 GATACCCTCCTTGTC-TTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 3665360 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || || || || ||||| |||||||| Sbjct 3665361 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 3665409 >seq15423 Length=9779632 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||| | |||||||||||||| || |||||| || || ||||| || || | | Sbjct 6864541 GACTCCATCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCA 6864482 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | || || || ||||| || ||||| || || |||||| |||| Sbjct 6864481 AAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTGGCCTTTACA 6864422 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || || | | || || |||| || | || || || || |||||||| Sbjct 6864421 TTTTCTAACGTATCCGAGGGTTCAACTTCGAGGGTAATAGTCTTCCCCGTAAGAGTTTTC 6864362 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 6864361 ACAAAAATCTGCAT 6864348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496082988735840