Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq16297 104 2e-17 seq26070 102 6e-17 seq13033 102 6e-17 seq9996 100 2e-16 seq23666 95.1 9e-15 seq20631 91.5 1e-13 seq24834 89.7 4e-13 seq16235 87.8 1e-12 seq19202 86.0 4e-12 seq18140 86.0 4e-12 seq15423 86.0 4e-12 seq13726 86.0 4e-12 seq15807 84.2 2e-11 seq11150 82.4 5e-11 >seq16297 Length=2103431 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || ||| | |||||||| || Sbjct 675308 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTCGAATGTTGTAGTCAGAC 675249 Query 15010 AGAATTC-TCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 ||| | | ||| |||||| | ||| |||||||| | ||||| | || || || || Sbjct 675248 AGAGTACGTCG-GTCTTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAGG 675190 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||||||| || || ||| |||||| ||||||| ||||| ||| || Sbjct 675189 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGATTCAAC 675130 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | | ||| ||||| || ||||| || ||||| | ||||| ||||| || Sbjct 675129 CTTGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCATGAAAATCTGCATTTT 675079 >seq26070 Length=4351986 Score = 102 bits (112), Expect = 6e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 14961 TCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGC 15020 ||| || || | |||||| ||||| || || || |||||||| || ||| | | | Sbjct 512814 TCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAGAGTACGTCC 512755 Query 15021 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTT 15080 |||||| | ||| |||||||| | |||| | || || || |||||||||||||| Sbjct 512754 GTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 512695 Query 15081 GTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAAT 15140 || || ||| |||||| ||||||| ||||| ||| || || | ||| || Sbjct 512694 ATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTCAACCTCGAGGGTGAT 512635 Query 15141 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 ||| || ||||| || ||||| || ||||| ||||| || Sbjct 512634 GGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTT 512596 >seq13033 Length=3880709 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||||||||||| | | || | || ||||| || ||||| || |||||||| || Sbjct 3665181 TGCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTG 3665240 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | || || | ||||||||||| |||||| |||||| ||||| || Sbjct 3665241 AGAGCGTGCGGCCATCCTCCAGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTG 3665300 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || || |||||||| ||||||| ||| ||| | || || || || || || | Sbjct 3665301 GGATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 3665360 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||| ||||| || || || || || || ||||| || ||||| Sbjct 3665361 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 3665409 >seq9996 Length=19681183 Score = 100 bits (110), Expect = 2e-16 Identities = 163/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| || | | || | || ||||| || ||||| || |||||||| || Sbjct 16335089 TGCCACCTCACAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTC-- 16335146 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||||| | | | || || | ||||||| ||| |||||| | |||| ||||| || Sbjct 16335147 TGAGACTGCGGCCATCCTCCAGCTGTTTGCTAGCAAATATCAGATGCTGCTGGTCAGGTG 16335206 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| ||||||| ||| ||| | || || || || || || | Sbjct 16335207 GGATACCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCAA 16335266 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 | || | ||| ||||| || || || || || || ||||| | ||||||| || Sbjct 16335267 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAACACCTGCATATCTG 16335320 >seq23666 Length=5806929 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || || || |||||||| || Sbjct 828674 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 828733 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||| | ||| |||||||| | |||| | || || || ||| Sbjct 828734 AGAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGGTGATCAGGAGGA 828793 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||||| |||| ||| || Sbjct 828794 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCAACT 828853 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | | ||| ||||| || ||||| || ||||| || ||||| ||||| || Sbjct 828854 TTGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTT 828903 >seq20631 Length=3741062 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||| | || | ||| || || | |||||| ||||| || ||||| |||||||| || | Sbjct 1078088 CCATCACGAAGTCTCAACACCAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAG 1078029 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||||| ||| |||||||| || |||| | || || || ||| Sbjct 1078028 AGAGTACGTCCATCTTCTAGTTGCTTGCCAGCATAGATCAGTCTTTGCTGATCAGGAGGA 1077969 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| ||||| ||||| | ||||| ||| || Sbjct 1077968 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACGTTTTCTTTCGTATCTGAGGGTTCAACC 1077909 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | | ||| || || || | || |||||||| | ||||| ||||| || Sbjct 1077908 TGGAGGGTGATAGTCTTCTCCGTAAGAGTTTTCATGAAAATCTGCATTTT 1077859 >seq24834 Length=2526834 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 14961 TCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGC 15020 ||| || || | |||||| || || || ||||| |||||||| || ||| | | | Sbjct 598469 TCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCC 598528 Query 15021 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTT 15080 ||||| | ||| |||||||| | |||| | || || || |||||||||||||| Sbjct 598529 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 598588 Query 15081 GTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAAT 15140 || || ||| |||||| ||||| | ||||| ||| || || | ||| || Sbjct 598589 ATCCTGGATCTTGGCCTTTACATTTTCTGTCGTATCCGAGGGTTCAACCTCAAGGGTGAT 598648 Query 15141 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 ||| || || || || ||||| || ||||| ||||| || Sbjct 598649 GGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 598687 >seq16235 Length=7452127 Score = 87.8 bits (96), Expect = 1e-12 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGA-ATTCTCGCG-TCTTCTAAT 15030 ||| ||||| || ||||| || |||||| | || ||||| | | | || || || | Sbjct 4796027 ATGCAGGGTGGACTCTTTCTGGATGTTGCAGTC--TGAGAGACTGTGGCCATCCTCCAGC 4796084 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 |||||||| || |||||| | |||| ||||| ||| || ||||||||||| |||| Sbjct 4796085 TGTTTGCCGGCAAATATCAGATGCTGCTGGTCAGATGGGATACCTTCCTTGTCTTGAATT 4796144 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 ||| ||| ||| | | || || || ||| || || || | ||| ||||| || || Sbjct 4796145 TTGGCTTTGACATTCTTAATGGTGTCACTAGGCTCAACCTCAAGGGTGATGGTCTTGTCT 4796204 Query 15151 GTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || ||||||| || ||||| Sbjct 4796205 TTGAGGGTCCTTACAAAGATCTGCAT 4796230 >seq19202 Length=12282305 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || || || |||||||| || Sbjct 12257038 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 12257097 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| |||||||| | |||| | || || || ||| Sbjct 12257098 AAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGGCTTTGCTGATCAGGAGGA 12257157 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||||| ||||| ||| || Sbjct 12257158 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACA 12257217 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | | ||| ||||| || || || || ||||| | ||||| ||||| || Sbjct 12257218 TTGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCATGAAAATCTGCATTTT 12257267 >seq18140 Length=5205659 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || || || |||||||| || Sbjct 3938579 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 3938638 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| ||| ||||||| | |||| | || || || ||| Sbjct 3938639 AAAGTACGTCCATCTTCCGGTTGCTTGCCAGTAAAGATCAGTCTTTGCTGATCAGGAGGA 3938698 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||||| ||||| ||| || Sbjct 3938699 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 3938758 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||| ||||| || || || || ||||| || ||||| ||||| || Sbjct 3938759 TCGAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCATTTT 3938808 >seq15423 Length=9779632 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || ||||| || | || |||||||| || | | | | | ||||| | ||| Sbjct 6864551 ATGCAGAGTAGACTCCATCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTG 6864492 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||||| | |||| | || || || |||||||||||||| || ||||| Sbjct 6864491 CTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTT 6864432 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | |||||| |||||| ||||| ||| || || | |||||| || || || || Sbjct 6864431 GGCCTTTACATTTTCTAACGTATCCGAGGGTTCAACTTCGAGGGTAATAGTCTTCCCCGT 6864372 Query 15153 CAGAGTTTTTACAAAAATTTGCATATT 15179 |||||||| |||||||| ||||| || Sbjct 6864371 AAGAGTTTTCACAAAAATCTGCATTTT 6864345 >seq13726 Length=17113052 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || || || |||||||| | Sbjct 5590443 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTTAGAC 5590502 Query 15010 AGAAT-TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 | | | | || | ||||| | ||| || |||| | |||| | || || || || Sbjct 5590503 AAAGTATGTC-CATCTTCAAGTTGCTTTCCAGAAAAGATCAGTCTTTGCTGATCAGGAGG 5590561 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||||||| || || ||| | |||||| ||||| | ||||| ||| || Sbjct 5590562 AATTCCTTCCTTATCCTGGATCTTGGTCTTTACATTTTCTGTTGTATCCAAGGGTTCAAC 5590621 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||| ||||| || ||||| || ||||| || ||||| ||||| || Sbjct 5590622 CTCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTT 5590672 >seq15807 Length=9314881 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 14961 TCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGC 15020 ||| || || | |||||| |||| || ||||| |||||||| || | | | | | Sbjct 6716641 TCTCAACACAAGATGAAGAATAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCC 6716582 Query 15021 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTT 15080 ||||| | ||| |||| ||| | |||| | || || || |||||||||||||| Sbjct 6716581 ATCTTCCAGTTGCTTGCTAGCAAAGATCAGTCTTTGCTGATCAGAAGGAATTCCTTCCTT 6716522 Query 15081 GTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAAT 15140 || || ||| |||||| ||||||| ||||| | || || || | ||| || Sbjct 6716521 ATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCTGAAGGCTCAACCTCGAGGGTGAT 6716462 Query 15141 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 ||| || || | || ||||| |||||||| ||||| || Sbjct 6716461 GGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCATTTT 6716423 >seq11150 Length=2949 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGA-ATTCTCGCG-TCTTCTAAT 15030 ||| ||||| || ||||| || |||||| | | ||||| | | | || || || | Sbjct 1837 ATGCAGGGTGGACTCTTTCTGGATGTTGCAGTG--TGAGAGACTGTGGCCATCCTCCAGC 1780 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 |||||||| || |||||| | |||| ||||| ||| || ||||||||||| |||| Sbjct 1779 TGTTTGCCGGCAAATATCAGATGCTGCTGGTCAGATGGGATACCTTCCTTGTCTTGAATT 1720 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 ||| ||| ||| | | || || || ||| || || || | ||| ||||| || || Sbjct 1719 TTGGCTTTGACATTCTTAATGGTGTCACTAGGCTCAACCTCAAGGGTGATGGTCTTGTCT 1660 Query 15151 GTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || ||||||| || ||||| Sbjct 1659 TTGAGGGTCCTTACAAAGATCTGCAT 1634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357266024010770