Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq25381 197 2e-45 >seq25381 Length=27760200 Score = 197 bits (218), Expect = 2e-45 Identities = 178/224 (79%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || ||||||||||| |||||||||||||| || || ||||| || |||||||| || Sbjct 8844199 GTCTGGAACAACTGCTCATCACCCCATTCCGGATGCTCCTGTTTAAGCACATCGCACACT 8844140 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||||||||| |||||||| || ||||| |||||||| | ||| ||||| | |||||| Sbjct 8844139 CTGTTGTGTTCCCTCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 8844080 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 ||||| | |||||| ||||| ||||||| || || |||| || | || | ||| | Sbjct 8844079 ACTTCCTGCCCCACCGCAAACCGCAGATGCTCAGGAACTTGAGGAGGGTAGATCATCTCT 8844020 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 |||| || |||||||| ||||| |||||||| || || ||||| Sbjct 8844019 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAAT 8843976 Score = 127 bits (140), Expect = 3e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || || ||||| ||||||||| ||| || ||||| || | ||| ||| Sbjct 8842425 TCACCTTTCACACCCAGGGGAGTCGGGCAGTCATCAGGTACTGGAGGAAGGGCTCTAGTA 8842366 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| || || || || ||||||||||| ||||||||||| || | |||||| Sbjct 8842365 TAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACATTGTAGGTT 8842306 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||| ||||||| | || |||||| Sbjct 8842305 GGTGGACTCTCAATCAAATGTGATCTGGCT 8842276 Score = 113 bits (124), Expect = 7e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 ||||||||| || |||| ||| | |||||||| || |||||| ||| ||| | || Sbjct 8843037 TCTTACCCCGTGGCCCAGGCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 8842978 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || || ||||||| || | |||||||||||| Sbjct 8842977 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGAGCCCTGGGGATC 8842918 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAGACG 10300 ||||| || | || | | || || ||| |||||||||| ||||||| || || | Sbjct 8842917 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCACTTGAATCAGGAAGCTG 8842858 Query 10301 CGCCTTACCTGA 10312 | ||||||||| Sbjct 8842857 CTTCTTACCTGA 8842846 Score = 93.3 bits (102), Expect = 6e-14 Identities = 191/284 (67%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||| || | ||||| |||||||| || |||| | ||| || | | | || Sbjct 8844779 CCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAACTCCATGTTCCAGTAACATA 8844720 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||| | || |||| || || ||| ||| || |||| ||| Sbjct 8844719 GAGTTGTTGTAGATAAACTGTTGATAGTTGTAGTTCTGGTCATGAATTTGAAAGGTGTCA 8844660 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| || | ||||||| | ||||||||||| ||||| || || || || || |||||| Sbjct 8844659 GGCAGAAGGGGATGCCAGTGATAGAGGGTATTAAACTCAGCAGCAATACGATTTTGGTAC 8844600 Query 9616 TGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTG 9675 || || | ||| |||| || |||||||| | || | |||||| || || || Sbjct 8844599 TGGAATTGTTTGTTGAAAAGTAGTTCTGGGTCAAATTTAAGTTTGAAGTGATAGCCACTC 8844540 Query 9676 AGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | ||||| ||||| | | || | ||| ||||| || || || Sbjct 8844539 AAGTGCTGTACATAGTCTTCAATCACAATCTTAATAGTCTCTCC 8844496 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/136 (74%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || || |||| | |||| || || ||||| |||||||| ||| ||| | Sbjct 8841351 CTTACGTGTTGAGCAGTTTTCACCATAGAATCCTGTCCGGGTACAATCACACTTATACTG 8841292 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 ||||| ||||| |||| ||||| ||| | || || || |||| ||||||||||| || Sbjct 8841291 GTCAAATCCCACACTCATACATACACCTTGGTTTTGACATGGGTAGGAACAGCAAGGATT 8841232 Query 10960 GGCTGCAATTTAAAAG 10975 ||| ||| |||||| Sbjct 8841231 TGCTACAA--TAAAAG 8841218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723466354234800