Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_016447.1 Length=219474 Score E Sequences producing significant alignments: (Bits) Value seq23666 194 2e-44 >seq23666 Length=5806929 Score = 194 bits (214), Expect = 2e-44 Identities = 219/291 (75%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 197359 ACAGAGGTAATAGG-ATCCGTGGGAGGTTTCGCCAGTTTTCCGCTAAATATCTCAAACGC 197417 |||||||| ||| |||| ||| |||| | | | | || |||||||||||| | Sbjct 874268 ACAGAGGTGTCAGGGATCCTAGGG-GGTTCTGTGACTCTCCCCCTAAATATCTCAGTAGA 874210 Query 197418 GACAGATATTGAGAACGTGGCTTGGAACGGCCCTAAAATCGCTTTAGCATTTGCCAATCC 197477 ||||| ||||||||||| || ||||| || || ||||| ||| | || || || ||||| Sbjct 874209 CACAGACATTGAGAACGTCGCCTGGAATGGTCCCAAAATTGCTCTTGCTTTCGCAAATCC 874150 Query 197478 TAAAGACGTTACCATAATGGATAAAAGCTACCAGGGTCGTGTCAACATTAGCCAAACCAA 197537 ||||| || ||| | ||||| |||||||||||||| || | ||||| | | || | Sbjct 874149 CAAAGATGTAACCGTTATGGACAAAAGCTACCAGGGCCGACTAAACATCACCAAATGGAG 874090 Query 197538 CTACTCTTTGTGCATTAGGAACCTGACCGTGAATGATGCTGGTTCGTATAAGGCCCAAAT 197597 ||||| ||| ||| || || ||||| |||| ||||| || || || || ||||| || Sbjct 874089 TTACTCCCTGTACATCAGCAATCTGACTCTGAACGATGCAGGCTCCTACAAAGCCCAGAT 874030 Query 197598 TAACAAAAATAATTCCCAAGTCACCACCAAGGAGGAATTTACTCTGTCTGT 197648 |||||||| ||||| ||||||||||| ||||| |||||||| ||||| || Sbjct 874029 AAACAAAAAGAATTCTCAAGTCACCACTAAGGAAGAATTTACCCTGTCCGT 873979 Score = 143 bits (158), Expect = 4e-29 Identities = 189/262 (72%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 209129 TCATCAAACACCTGTAGTCTGATTTTCCAGTCCTGCTCAAACATGGTATCTTTTAAAACC 209188 ||| | |||||||| || ||||| ||||| || |||||| ||||||| || || || ||| Sbjct 956377 TCACCGAACACCTGCAGCCTGATCTTCCATTCTTGCTCATACATGGTCTCCTTCAACACC 956318 Query 209189 CTCATAATATATATGTTAGCATCCTCTTTTTGAACGCGAGACAAATATAACGCACCGGAC 209248 ||||| || || ||||| ||||||||||| || | ||| | || | || || Sbjct 956317 CTCATGATGTAGATGTTGGCATCCTCTTTCTGGATCTTAGAGATGTACAGTGCGCCACTT 956258 Query 209249 TGGGAATCCAATCGAACTCGCCCTTTGAATTTATTGTCAAAATATTTTAAGCGTTTTACA 209308 || |||| | || || | ||||| |||||||| ||||| || || | | ||| ||| Sbjct 956257 TGATAATCGAGTCTGACCCTGCCTTTAAATTTATTATCAAAGTACTTAAGTCTTTTGACA 956198 Query 209309 TCCCAATCCGCTATCTTTTGATCATAGGTACAAAACCATGTAATCTCTCTAACATTTTCA 209368 ||||| || || ||||| || | || || |||||||| || || ||||| || || ||| Sbjct 956197 TCCCAGTCTGCAATCTTCTGGTGGTAAGTGCAAAACCAAGTTATTTCTCTGACGTTCTCA 956138 Query 209369 GGAAGAGATTCTGAAATGTTCA 209390 || || || || ||||||| Sbjct 956137 GGTAGGCTCTCGGAGATGTTCA 956116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701934941194080