Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq12132 291 1e-73 seq23499 268 1e-66 seq22719 248 1e-60 seq27380 107 2e-18 seq24714 107 2e-18 seq18140 107 2e-18 >seq12132 Length=2475592 Score = 291 bits (322), Expect = 1e-73 Identities = 534/768 (70%), Gaps = 16/768 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || |||| ||||| Sbjct 57305 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTATCCTT 57247 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAG--TACTACA 36988 | ||||| ||||| |||||||| ||||||||||| | || | | | | | ||| | Sbjct 57246 CCAGTGAAATATTCTCCATAAAGTCAAATGGATTC--TCTACTCTGAAAACCTTGCTAAA 57189 Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATA 37048 | |||| || ||| || | || ||||| || ||||||| |||||| | Sbjct 57188 ACCCAGTTCCAGCATAAGTCTGCCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCA 57129 Query 37049 GTTTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTA 37107 ||| || ||||| || || || || | || || ||| ||| | | || |||| | Sbjct 57128 GTTCATCCCAATGAGCTTCACAGGCAAAGCCTCAGTGAGGAACTCCTGTT-CTATCCGAA 57070 Query 37108 CAGCATCTTTAACTATATTAACAATAACT-TCTTCAGTTGGGGGATATTTTAAATATTTA 37166 |||||| ||| ||| || || || || || | ||| | | || | ||| Sbjct 57069 CAGCATTGATAATTAT-TTCGCATACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTG 57011 Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 |||| | || ||||||||||| |||||||| |||||||| || || | |||||||||| Sbjct 57010 AACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAA 56951 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 || || | || ||||| | |||| ||| || | ||| ||||| | ||||||||| ||| Sbjct 56950 AATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCA 56891 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTA 37346 |||||||| || ||||| ||||| ||||| ||||| | ||| ||| | || | Sbjct 56890 GAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACGCG-CGTTCACCATAGGTAGCCTGT 56832 Query 37347 TAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCA 37406 | || |||||| | |||||||| ||| || ||||| || |||||| Sbjct 56831 TTGTCCCCAATCCAGCGCAAGGCCCAATCTGACTTC---TTGACACAAGGCATCGTTTCA 56775 Query 37407 ATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAA 37466 || || || |||||||| | |||| | |||| |||| ||||| ||||| || | | Sbjct 56774 ATGGCATTGAAGAGAAATTCCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGA 56715 Query 37467 CTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCT 37526 |||||||||||||| || || ||||| || || || || |||||||| ||||| | ||| Sbjct 56714 CTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAACCATAGAAACAGCGGGCT 56655 Query 37527 TCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATC 37585 || | |||| ||||| || | ||| | || | ||||||||||| ||||| |||| Sbjct 56654 TCTG-TAATCTGAACTTCTTGGTTAAATCGCTCCACCAAGTTTTCATTTACTATGTCATC 56596 Query 37586 ACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633 ||| |||||||| ||||| ||||| | |||||| | ||| || || Sbjct 56595 ACTTGCTGCAAATAAAGCCAGAACGTGGGATATAAAGTATCTCTCCTC 56548 >seq23499 Length=2348749 Score = 268 bits (296), Expect = 1e-66 Identities = 529/769 (69%), Gaps = 14/769 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| |||||||| | ||||| || || |||| | || || || || ||||||||||| Sbjct 2215607 CATCACTCCCATCCTCTGATACTCACCTACTCTCGTCTCAAAGAAGTTAGTCTTTCCTTC 2215666 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAG--TACTACAT 36989 ||||| ||||| |||||||| ||||||||||| | || | | | | | ||| | Sbjct 2215667 CAGTGAAATATTCTCCATAAAGTCAAATGGATTC--TCTACTCTGAAAACCTTGCTAAAA 2215724 Query 36990 GATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAG 37049 | |||| || ||| || || || ||||| | |||| || |||||| || Sbjct 2215725 CCCAGTTCCAGCATAAGTCTGTCTGCCACAAACCCAATGTGTTGCTTCATTAGAGTGCAG 2215784 Query 37050 TTTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTAC 37108 || || ||| | || || || || | || || ||| ||| | | | ||| || Sbjct 2215785 TTCATCCCAGTGAGCTTCACAGGCAAGGCCTCAGTGAGGAACTCCTGCT-CTAACCGAAC 2215843 Query 37109 AGCATCTTTAACTATATTAACAATAACTTCT--TCAGTTGGGGGATATTTTAAATATTTA 37166 ||||| ||| ||| || | || | ||| || | ||| | | | | ||| Sbjct 2215844 AGCATTGATAATTAT-TTCTCT-TACCCTCTCCTCTGATGGTTTGTGTACTGGGTGTTTG 2215901 Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 |||| | || ||||||||||| |||||||| |||||||| || || | |||||||||| Sbjct 2215902 AACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAA 2215961 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 || || | || ||||| | |||| ||| || | ||| ||||| | ||||||||| ||| Sbjct 2215962 AATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCA 2216021 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACT- 37345 ||||||||||| ||||| ||||| ||||| ||||| | |||| ||| | || | | || Sbjct 2216022 GAAAAGAAAATGCCTTCCACTGCAGCAAAGGCTACGACACGTTCACC-ATAGGTAACCTC 2216080 Query 37346 ATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTC 37405 | || | |||| | | ||| |||||||| || ||||| || ||||| Sbjct 2216081 TTTGTCCCCAGTCCAGTGCAAGGCCCAGTCTGCCTTCTTCTTGACACAAGGCATCGTTTC 2216140 Query 37406 AATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAA 37465 || || || |||||||| | |||| |||| |||| ||||| ||||| || | Sbjct 2216141 AACGGCATTGAAGAGAAATTCCCTTTCGCTGGGATCTTTTATGTAAGTGTCAATAAGGAG 2216200 Query 37466 ACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGC 37525 ||||||||||||||| || || ||||| | || || || || ||||| ||||| | || Sbjct 2216201 ACTATACATTTCAGAATGTATGTTTTCCCTGGCAATTTGGAATCCATAGAAACAGCGGGC 2216260 Query 37526 TTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCAT 37584 ||| | |||| ||||| || | ||| | || | ||||||||||| ||||| || | Sbjct 2216261 TTCTG-TAATCTGAACCTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCCT 2216319 Query 37585 CACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633 ||| |||||||||||||| ||||| | |||||| | ||| || || Sbjct 2216320 TACTCGCTGCAAAGAAAGCCAGAACGTGGGATATAAAGTCTCTCTCCTC 2216368 >seq22719 Length=8987742 Score = 248 bits (274), Expect = 1e-60 Identities = 520/767 (68%), Gaps = 30/767 (4%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || |||||||||| Sbjct 8555307 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 8555249 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAG--TACTACA 36988 | ||||| ||||| |||||||| |||||||||| | || | | | | | ||| | Sbjct 8555248 CCAGTGAAATATTCTCCATAAAGGCAAATGGATTC--TCTACTCTGAAAACCTTGCTAAA 8555191 Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATA 37048 | |||| || ||| || || || ||||| || ||||||| |||||| | Sbjct 8555190 ACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCA 8555131 Query 37049 GTTTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTA 37107 || || ||||| || || || || | || || ||| ||| | | || |||| | Sbjct 8555130 ATTCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAACTCCTGTT-CTATCCGAA 8555072 Query 37108 CAGCATCTTTAACTATATTAACAATAACT---TCTTCAGTTGGGGGATATTTTAAATATT 37164 |||||| ||| ||| | | | ||| || || | ||| | | || | || Sbjct 8555071 CAGCATTCATAATTATTT---CTCTTACTCTCTCCTCTGATGGTTTGTGTACTATGTGTT 8555015 Query 37165 TAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAG 37224 | |||| | || ||||||||||| |||||||| |||||||| || || | |||||||| Sbjct 8555014 TGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAG 8554955 Query 37225 AAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATC 37284 |||| || | || ||||| | |||| ||| || | ||| ||||| | ||||||||| | Sbjct 8554954 AAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAAC 8554895 Query 37285 CAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAAC 37344 |||||||||| || ||||| ||||| ||||| ||||||| ||| ||| | || | Sbjct 8554894 CAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCT 8554835 Query 37345 TATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTT 37404 | || |||||| | |||||||||||| | ||||| || |||| Sbjct 8554834 CTTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTGGACACAAGGCATCGTTT 8554775 Query 37405 CAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTA 37464 |||| || || || ||||| | |||| | |||| |||| |||| ||||| || | Sbjct 8554774 CAATGGCATTGAAAAGAAATTCCCTTTCGTTGGGATCTTTTATGCAAGTGTCAATAAGGA 8554715 Query 37465 AACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAG 37524 |||||||||||||||| || || ||||| || || || |||| | | Sbjct 8554714 AACTATACATTTCAGAATGTATGTTTTCCATGGC--------------AATAACAGCGGG 8554669 Query 37525 CTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCA 37583 ||| | |||| ||||| || | ||| || | ||||||||||| ||||| || Sbjct 8554668 TTTCTG-TAATCTGAACTTCTTGGCTAAATTGCTCCACCAAGTTTTCATTTACTATGTCA 8554610 Query 37584 TCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC 37630 ||||| |||||||||||||| ||||| | |||||| | ||| || Sbjct 8554609 TCACTTGCTGCAAAGAAAGCCAGAACGTGGGATATAAAGTATCTCTC 8554563 >seq27380 Length=10165399 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||||||||| || | || ||||| | |||| ||| || Sbjct 7666513 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 7666572 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | ||||||||| ||||||||||| || ||||| ||||| ||||| ||| Sbjct 7666573 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 7666632 Query 37320 AC 37321 || Sbjct 7666633 AC 7666634 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || |||||||||| Sbjct 7664715 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 7664773 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| ||||||||||| Sbjct 7664774 CCAGTGAAATATTCTCCATAAAGTCAAATGGATT 7664807 >seq24714 Length=5211462 Score = 107 bits (118), Expect = 2e-18 Identities = 308/468 (66%), Gaps = 18/468 (4%) Strand=Plus/Plus Query 37176 CATGCAAAATCACAATGTAAAC--------CTTCATCTCTACTTATCAATTCATTAGAAA 37227 || ||||||||||| ||||||| | ||||| || || || | |||||| |||| Sbjct 5055790 CAAGCAAAATCACAGTGTAAACTGTTAAACCCTCATCACTGCTAATAAGTTCATTGGAAA 5055849 Query 37228 AGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAG 37287 | || | || | ||| | | | ||| || | || ||||| | ||| ||||| |||| Sbjct 5055850 ATGTGAGGCCAGACATCAGTCATTGTTTCTTGAGGCAGAATATCGATGCGAAAGAACCAG 5055909 Query 37288 AAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA-CTA 37346 || |||| | ||||| | || ||||| ||| ||| | || || || | | || Sbjct 5055910 AAGAGAAGGTGCCTTCTA-TG--GCAAAGGCTGCAACAAGTTCTCCATGGGTAGCATCTT 5055966 Query 37347 TAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCA 37406 | ||| || |||| | ||||||||||| | ||||| || ||||| Sbjct 5055967 TGTTCACAA-TCCAACACAAGGCCCAATCTGCCTCCTCCCTGACACAAGGCATCCTTTCA 5056025 Query 37407 ATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAA 37466 || || || |||||||| | |||||| | ||| | | || || ||||| | | | Sbjct 5056026 ATGGCATTGAAGAGAAATTCCATTTCTTTGTTGTCTTTAACAT--GTGTCAATAAAGAGA 5056083 Query 37467 CTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCT 37526 ||| ||| ||||| | || ||||| ||||| || || || ||||| || || | || Sbjct 5056084 TTATCCATGTCAGAATAGATGTTTTCCATAGCAATTTGGAAGCCATAGAAGCAGGTTTCT 5056143 Query 37527 TCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCA 37586 || ||||| || | | ||| || | ||||||| || |||| | ||||| Sbjct 5056144 GTAGCC---TGAACTTCTTGGACAAATTGCTCCACCAAGTTTTTATCAACTGTGCCATCG 5056200 Query 37587 CTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 37634 | ||||||||||||| |||| || |||||||| |||||| ||| Sbjct 5056201 CATGCTGCAAAGAAAGTCAGAATATTGGATATAAAATATCTTTCCTCA 5056248 >seq18140 Length=5205659 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||||||||| | ||||||||| | Sbjct 751641 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTTTTCT 751582 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || ||||||| ||||| || || || || | Sbjct 751581 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGG 751522 Query 37318 CTAC 37321 | || Sbjct 751521 CCAC 751518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592102662668880