Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq12486 298 4e-76 seq19633 161 8e-35 seq16616 129 5e-25 seq24003 118 9e-22 seq13603 113 4e-20 seq5064 111 1e-19 seq26307 93.3 3e-14 >seq12486 Length=6174982 Score = 298 bits (330), Expect = 4e-76 Identities = 428/598 (72%), Gaps = 9/598 (2%) Strand=Plus/Plus Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824 ||||||||| |||||| || | || |||||| | ||||| || || | ||||| ||||| Sbjct 2654292 TGGGAAAGG-TCTGGGTTCTCGCTGAAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGT 2654350 Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884 | | || || ||||||| || || ||||| || ||||| | || || |||| ||| | Sbjct 2654351 AAATATGTGCATCTCCCAAAGTATGTACAAAGTCACCCGGCTTCAGGCCCGTGATGTGCG 2654410 Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944 | ||||||||| |||| || | |||||||||||||| || || || || || || |||| Sbjct 2654411 CGATCATGTACATGAGCAGGGCCTAGCTGGCGATGTTGAAAGGCACACCTAGGCCGATGT 2654470 Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30004 | ||||| | |||||| ||||| || || ||||| || | ||| || ||||| || | Sbjct 2654471 CTCCCGATCGCTGGTACAGCTGGCAGGACAGCTCACCATTCACCACTTAGAACTGGCAGA 2654530 Query 30005 TGGTGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACA 30061 || ||||| ||||| || ||||| |||| ||| ||| | || ||||| | |||| Sbjct 2654531 GGGCATGGCATGGAGGCAGCGCCATCAGAGG---AAGATCTCTTGGATTCCAAGTGCACG 2654587 Query 30062 CGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGAT 30121 |||||| | ||||| || |||||| | ||||| ||| | | ||||||| || | Sbjct 2654588 TGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACTCTTTGCAGTTGGT 2654647 Query 30122 CCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCC 30181 | || || | || || || |||| ||| || | || ||||| || |||||||||| Sbjct 2654648 CAACTCCTTTTCCTGAATAATCTGAATCCATATC--TCTATTCTGCCCCAAAATGCCTCC 2654705 Query 30182 ACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGT 30241 | ||||| || || || || |||| ||| || ||||| ||| ||| ||| | | Sbjct 2654706 ATTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTAT 2654765 Query 30242 CCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTT 30301 ||| ||||||| | | || ||||| |||||||| || || ||||| | ||||||| Sbjct 2654766 CCAGAAAGTCTTGGTATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGGCAGCTCTT 2654825 Query 30302 TGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAA 30359 | |||||||| || ||| ||||||| || |||||||| || ||||||| || Sbjct 2654826 CAGCATTTGTGGATCCCTTGATAAACCACAACAACTCCTCCAAAACACCCTTCCAGAA 2654883 Score = 214 bits (236), Expect = 1e-50 Identities = 294/408 (72%), Gaps = 6/408 (1%) Strand=Plus/Plus Query 29955 CTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCA 30014 |||||| ||||| || || ||||| |||| ||| || ||||| || | || ||||| Sbjct 331988 CTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACTTAGAACTGGCAGAGGGCATGGCA 332047 Query 30015 CGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACACGATGATGCG 30071 ||||| || ||||| |||| ||| ||| | || ||||| ||||||| |||||| | Sbjct 332048 TGGAGGCAGCGCCATCAGAGG---AAGATCTCTTGGATTCCAAGCGCACATGATGATTCT 332104 Query 30072 CCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCAT 30131 ||||| || |||||| | ||||| ||| | | ||||||| || || || || Sbjct 332105 TCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACTCTTTGCAGTTGGTCAACTCCTTG 332164 Query 30132 CCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCC 30191 || || || |||| ||| || |||| ||||| || ||||||||||||||||| || Sbjct 332165 TCCTGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCC 332224 Query 30192 GTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTC 30251 || || || |||| ||| || ||||| ||| ||| ||| | |||| |||||| Sbjct 332225 ATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTATCCAGAAAGTC 332284 Query 30252 TCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGT 30311 || ||| || ||||| |||||||| || || ||||| || |||||||| | ||||| Sbjct 332285 TCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGT 332344 Query 30312 GGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAA 30359 ||| || ||| |||||||||| |||||||| || ||||||| || Sbjct 332345 GGATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCTTCCAGAA 332392 >seq19633 Length=3468624 Score = 161 bits (178), Expect = 8e-35 Identities = 279/404 (69%), Gaps = 5/404 (1%) Strand=Plus/Minus Query 30049 TTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCG 30108 ||||| | ||||| |||||| | ||||| || |||||| | ||||| ||| | | Sbjct 1960016 TTCCAAGTGCACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACT 1959957 Query 30109 TTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCT 30168 ||||||| || || || || || || || |||| ||| || |||| ||||| Sbjct 1959956 CTTTGCAGTTGGTCAACTCCTTGTCCTGAATAATCTGAATCCATCTC--TGTATTCTGCC 1959899 Query 30169 CCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCG 30228 || ||||||||||||||||| || || || || |||| || || |||| ||| | Sbjct 1959898 CCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGT---CCCCTTCTCTGGCGGAG 1959842 Query 30229 AAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTC 30288 || ||| | |||| |||||||| ||| || ||||| |||||||| || || ||||| Sbjct 1959841 AATCCCAAGCTATCCAGAAAGTCTCAGGATCCATTGGCATCCCAGATTTTCACTCCCTTG 1959782 Query 30289 TCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACG 30348 || |||||||| | |||||||| || ||| |||||||||| ||||||| || Sbjct 1959781 GATGACAGCTCTTTAGCATTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAACA 1959722 Query 30349 GCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACATG 30408 ||||||| || | | ||||| || || || ||||| | | | |||| ||| Sbjct 1959721 CCCTTCCAGAACAGACATTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGC 1959662 Query 30409 GCCTGAGAACCAAACACGGACAAGACTCCCGTGCCCGTCCTGTC 30452 ||||| | ||||| |||| | |||||||| || | ||| Sbjct 1959661 GCCTGCCTGCAGAACACCGACAGGGTCCCCGTGCCGGTGCGGTC 1959618 >seq16616 Length=7972016 Score = 129 bits (142), Expect = 5e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||||||||| || | ||||||||| ||||| || || Sbjct 2012183 AGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGC 2012242 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| ||||| |||||||| ||||| || || ||||| |||| | Sbjct 2012243 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAAGACAGCTCACCGTTCACC 2012302 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || || ||||| || | || ||||| ||||| || ||||| || Sbjct 2012303 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAG 2012346 Score = 102 bits (112), Expect = 7e-17 Identities = 127/173 (73%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| ||||| || || |||||||||||||| || || || || |||| ||| Sbjct 2016354 CATATCTCTGTATTCTGCCCCAAAGTGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 2016413 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || ||||| ||| ||| ||| | |||| ||| |||| ||| || ||||| || Sbjct 2016414 CCCTTCTTCTCTGGCGGAGAATCCCAAGCTATCCAGAAAATCTCGGGATCCATTGGCATC 2016473 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30322 |||||| || || ||||| || |||||||| | |||||||| || |||| Sbjct 2016474 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC-CTGA 2016525 >seq24003 Length=1483050 Score = 118 bits (130), Expect = 9e-22 Identities = 185/260 (71%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || |||||||| |||| || || || || | Sbjct 479906 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 479847 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 479846 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATT 479787 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258 ||| || ||| | |||||| || | |||| | ||| | || | | | || || || | Sbjct 479786 CTGTTTACCTTCTATTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATTTC 479728 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317 ||| || |||| ||||| || || || || ||||| |||||| ||||| || Sbjct 479727 TGAGT------GGCGGCCAGGGCAGGTCCCCCTTCTTGCCGATACCCATGTTCTGG-GAC 479675 Query 112318 ACGGCCACGATACCGTTCAG 112337 || || ||||| | ||| || Sbjct 479674 ACAGCGACGATGCAGTTTAG 479655 >seq13603 Length=4153961 Score = 113 bits (124), Expect = 4e-20 Identities = 184/260 (71%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || | || || ||||||| ||| ||||| || || || || | Sbjct 1089579 ATGAGCTCCTTGTGGAGGTTTCTTGAGTTCCCTGCCGAGAACTACATTAATTCTATCCTT 1089520 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 1089519 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 1089460 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258 ||| || || |||||||| || | |||| | ||| | || | | || || || | Sbjct 1089459 CTGTTTATCTTCTACTGAAGAGGTCGTGGTC-ATTCTCTGGAAATACCTGAATTCATTCC 1089401 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317 || || |||| ||||| || | ||| || |||||||||||| ||||| || Sbjct 1089400 TGAG------CGGCGGCCAGGGCAGGTCCCTGTTCTTGCCGATGCCCATGTTCTGG-GAC 1089348 Query 112318 ACGGCCACGATACCGTTCAG 112337 || || ||||| | ||| || Sbjct 1089347 ACAGCGACGATGCAGTTTAG 1089328 >seq5064 Length=10951 Score = 111 bits (122), Expect = 1e-19 Identities = 169/236 (72%), Gaps = 10/236 (4%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || |||| | | ||||||||||| ||||| || || || || | Sbjct 10384 ATGAGCTCCTTGTGGAGGTTCTTGA-GTTCCCTGCTGAGAACTACATTAATTCTATCCTT 10326 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 10325 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 10266 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258 || || || |||||||| || | |||| | ||| | || | | || || || | Sbjct 10265 TTGTTTATCTTCTACTGAAGAGGTCGTGGTC-ATTCTCTGGAAATACCTGAATTCATTCC 10207 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGG 112313 || || |||| ||||| || ||||| || |||||||||||| ||||| Sbjct 10206 TGAG------CGGCGGCCAGGGCAGGTCACCGTTCTTGCCGATGCCCATGTTCTGG 10157 >seq26307 Length=1940483 Score = 93.3 bits (102), Expect = 3e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || ||||||||||| ||||| || || || || | | ||||| |||||| || || Sbjct 153258 TTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGA 153199 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTT 112205 ||||||||||| ||||| |||||||| ||||||| ||||| || Sbjct 153198 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTT 153155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408473567659106