Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq5696 107 5e-19 >seq5696 Length=1770758 Score = 107 bits (118), Expect = 5e-19 Identities = 189/273 (69%), Gaps = 7/273 (3%) Strand=Plus/Minus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| |||||||| ||| ||||| | |||| || || || || || | | Sbjct 498631 TTCCTTGTGGGTGTTATGGAAGAGTAGCTTCACGGTCTGGCTTGGCTGCAAAACACTTTA 498572 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 ||||||| || |||||||| || ||| ||| | ||| || || ||||||||||| | | Sbjct 498571 TTGATGTAGGAGCTGGTGTCATAGATGAAGATTGTAGAGGAAATGTTGGTGTTGTACTGT 498512 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAA 1134 |||||||| || || ||| ||| | | || ||||||| | ||||| ||| | | Sbjct 498511 TTAATTTTGGCAAAGAAAAG---TTTGAAGTCAAAAAAGGTGATCGAATTGCACAGCTCA 498455 Query 1135 TTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAA 1194 |||||||| | | ||| ||| || || ||| | | || || || | |||| Sbjct 498454 TTTGTGAACGGATTTTTTACCCAGAAATAGAAGAAGTTCAAGCTTTGGATGACACCGAAA 498395 Query 1195 GGGGTTCTGCAGGATTTGGGTCTAC-CGGAAGA 1226 ||||||| | ||| ||||| || || |||||| Sbjct 498394 GGGGTTCAGGAGGTTTTGGTTCCACTGGGAAGA 498362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138633969977832