Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq19423 190 4e-43 seq22719 156 8e-33 seq12132 152 1e-31 seq27864 145 1e-29 seq23499 136 7e-27 seq24529 93.3 8e-14 seq17644 91.5 3e-13 seq6244 84.2 4e-11 >seq19423 Length=11923251 Score = 190 bits (210), Expect = 4e-43 Identities = 188/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||||||||| | || | ||| || ||||| |||||||| ||||||||||| Sbjct 11532300 AGCAGCTGACAGCCGTTGCTGACGTGGGTCATGACCTTTTGTTTGAGCTGGGCCACCTGC 11532241 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | |||||| | ||||| || ||||| || | ||||||| |||||| Sbjct 11532240 TCCCGGAGGAGGCCGGCGGTACTCGACAGCCCCGCGTTCTCGGCCTTGAGCGTCTTCACC 11532181 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 11532180 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 11532121 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | |||||||| || ||||| ||||||| ||| || Sbjct 11532120 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCTTGGTCTTCCATGTTGATGGGG 11532061 Query 241625 GAC 241627 ||| Sbjct 11532060 GAC 11532058 Score = 86.0 bits (94), Expect = 1e-11 Identities = 86/113 (76%), Gaps = 8/113 (7%) Strand=Plus/Minus Query 238928 TGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGTTA 238987 |||||||| ||||||||| | ||||| || | | |||||| | ||||| |||||||| Sbjct 11532261 TGTTTGAGCTGGGCCACCTGCTCCCGGAGGAGGCCGGCGGTACTCGACAGCCCCGCGTTC 11532202 Query 238988 TCAGACTTGAGCAT--------TCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 || | ||||||| | | |||||||| ||||||||||| |||||||| Sbjct 11532201 TCGGCCTTGAGCGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 11532149 >seq22719 Length=8987742 Score = 156 bits (172), Expect = 8e-33 Identities = 360/534 (67%), Gaps = 15/534 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || ||||| |||||||||||||| ||||| || |||| || || ||||| Sbjct 8555292 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 8555233 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTAT-ACACCCGTG-TCAGGCCCATCTGTTCCAGC 47956 ||| ||| || || || | | | | | | || || | | |||| |||||||| Sbjct 8555232 CATAAAGGCAAATGGATTC--TCTACTCTGAAAACCTTGCTAAAACCCA---GTTCCAGC 8555178 Query 47957 AGGTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 | | || || || |||| ||||||| ||| || ||| ||||| || ||| Sbjct 8555177 ATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATG 8555118 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 || ||| ||||| |||| ||||| ||||||| |||||| | || || | | | Sbjct 8555117 AGCTTCACAGGCAAGGCCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCATTCATAATT 8555058 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 || | | || | |||||| ||||||| | ||| ||| | | || ||| Sbjct 8555057 ATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTATGTGTTTGA---ACATCAGGCAA 8555001 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 ||||| || | ||| || || || || | ||| || || | || || || ||| ||| Sbjct 8555000 GCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCA 8554941 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | | ||||||||||| || | || ||||| ||||| ||||||||| Sbjct 8554940 GGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATG 8554881 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 || |||||||| || || || | | || || | | ||| | ||||| ||| Sbjct 8554880 CCTTCCACTGCAGCAAAGGCTACAACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATC 8554821 Query 48314 CAG-GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 ||| | ||| ||||| ||||||||||||| || || |||||||| || ||||| Sbjct 8554820 CAGCGCAAG-GCCCAATCTGCCTTCTTCTGGACACAAGGCATCGTTTCAATGGC 8554768 >seq12132 Length=2475592 Score = 152 bits (168), Expect = 1e-31 Identities = 369/544 (68%), Gaps = 21/544 (4%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || ||||| |||||||||||||| |||| || |||| || || ||||| Sbjct 57290 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTATCCTTCCAGTGAAATATTCTC 57231 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTAT-ACACCCGTG-TCAGGCCCATCTGTTCCAGC 47956 ||| ||| || || || | | | | | | || || | | |||| |||||||| Sbjct 57230 CATAAAGTCAAATGGATTC--TCTACTCTGAAAACCTTGCTAAAACCCA---GTTCCAGC 57176 Query 47957 AG--GTGATCC-GCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 | || || || || |||| ||||||| ||| || ||| |||||| || ||| Sbjct 57175 ATAAGTCTGCCTGCCACAAACTCAATGTATTGCTTCATTAGAGTGCAGTTCATCCCAATG 57116 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 || ||| |||||||||| ||||| ||||||| |||||| | || || | | Sbjct 57115 AGCTTCACAGGCAAAGCCTCAGTGAGGAACTCCTGTTCTATCCGAACAGCATTGATAATT 57056 Query 48074 ATCT-GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 || | || || | | |||||| ||||||| ||||| ||| | | || ||| Sbjct 57055 ATTTCGCATA-CTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGA---ACATCAGGCA 57000 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 ||||| || | ||| || || || || | ||| || || | || || || ||| || Sbjct 56999 AGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCC 56940 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 |||||| | || | | ||||||||||| || | || ||||| ||||| |||||||| Sbjct 56939 AGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGAT 56880 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 ||| |||||||| || || || | || | || || | | ||| | ||||| || Sbjct 56879 GCCTTCCACTGCAGCAAAGGCTACGCGCGT-TCACCATAGGTAGCCTGTTTGTCCCCAAT 56821 Query 48313 CCAG-GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGA 48371 |||| | ||| ||||| |||| |||||||| || |||||||| || ||||| || Sbjct 56820 CCAGCGCAAG-GCCCAATCTG---ACTTCTTGACACAAGGCATCGTTTCAATGGCATTGA 56765 Query 48372 AGAG 48375 |||| Sbjct 56764 AGAG 56761 >seq27864 Length=3652808 Score = 145 bits (160), Expect = 1e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 1472339 AGGACTTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGATGCCAGC 1472398 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| |||||||||||||||||| |||| |||||||||||| Sbjct 1472399 TCCGTGTTCTGGCTCTTGAGGGTCTTCACTTTCTCCTCCAGGCGCGAGATGCGTTCCAGC 1472458 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || | ||| || ||||||||| Sbjct 1472459 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTG 1472518 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||| ||||| || ||| Sbjct 1472519 ATGCGCTCCTGCGTGTCCATATCGATGGGCGAC 1472551 >seq23499 Length=2348749 Score = 136 bits (150), Expect = 7e-27 Identities = 361/543 (66%), Gaps = 15/543 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || ||||| ||||||||||||| ||||| || |||| || || ||||| Sbjct 2215622 CTGATACTCACCTACTCTCGTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 2215681 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTAT-ACACCCGTG-TCAGGCCCATCTGTTCCAGC 47956 ||| ||| || || || | | | | | | || || | | |||| |||||||| Sbjct 2215682 CATAAAGTCAAATGGATTC--TCTACTCTGAAAACCTTGCTAAAACCCA---GTTCCAGC 2215736 Query 47957 AGGTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 | | || || || || | |||| || ||| || ||| |||||| || || Sbjct 2215737 ATAAGTCTGTCTGCCACAAACCCAATGTGTTGCTTCATTAGAGTGCAGTTCATCCCAGTG 2215796 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 || ||| ||||| |||| ||||| ||||||| ||||| | | || || | | Sbjct 2215797 AGCTTCACAGGCAAGGCCTCAGTGAGGAACTCCTGCTCTAACCGAACAGCATTGATAATT 2215856 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 || | | || | |||||| ||||||| |||| ||| | | || ||| Sbjct 2215857 ATTTCTCTTACCCTCTCCTCTGATGGTTTGTGTACTGGGTGTTTGA---ACATCAGGCAA 2215913 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 ||||| || | ||| || || || || | ||| || || | || || || ||| ||| Sbjct 2215914 GCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCA 2215973 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | | ||||||||||| || | || ||||| ||||| ||||| ||| Sbjct 2215974 GGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAAATG 2216033 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 || |||||||| || || || || | || || | | | | | ||||| || Sbjct 2216034 CCTTCCACTGCAGCAAAGGCTACGACACGTTCACCATAGGTAACCTCTTTGTCCCCAGTC 2216093 Query 48314 CAG-GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 ||| | ||| |||||||||||||||||||||| || |||||||| || | ||| ||| Sbjct 2216094 CAGTGCAAG-GCCCAGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAACGGCATTGAA 2216152 Query 48373 GAG 48375 ||| Sbjct 2216153 GAG 2216155 >seq24529 Length=32172056 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 5501933 TTCACTTTTTCCTCCAGCCGGGCGATTCTCTCCAGCTTCCTTTTTCGGCACTTGGAGGCA 5501992 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| |||||||||| Sbjct 5501993 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 5502052 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 5502053 ATGGGGGAC 5502061 >seq17644 Length=22291198 Score = 91.5 bits (100), Expect = 3e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||| | || || |||||||||||||||||| |||||| ||||||||||| ||| Sbjct 3012394 GTGTACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG 3012335 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| || |||||||| || |||| || |||||| ||| Sbjct 3012334 -TTGCTCTTCCGATTACAGGAATCTTTATAGAGCATATACGGGGTACCTGTCTCTGTCTG 3012276 Query 213647 GGAC 213650 ||| Sbjct 3012275 AGAC 3012272 >seq6244 Length=9589894 Score = 84.2 bits (92), Expect = 4e-11 Identities = 252/386 (65%), Gaps = 6/386 (2%) Strand=Plus/Plus Query 38802 AGGAACATAACCAGGTCAGGCTTGGGTAGACCCACATCTGGTCCCATGCACCACTCCACG 38861 ||||||| |||||||| || ||||| || |||| ||||| | | ||||| || | | Sbjct 8697770 AGGAACAGGACCAGGTCGGGTTTGGGAAGGCCCATGTCTGGGTGCTTACACCAATCTAGG 8697829 Query 38862 GGCATGTCAGGTTTCGCGCTGCTGAATGCCACACCGGAGAATGCGTACCTGTCCAACACC 38921 | | || || || | ||| |||||||| || |||||||| ||||||| || Sbjct 8697830 GAAAAGTTCTCCTTGGCACCCGAGAAGGCCACACCAGAAAATGCGTATCTGTCCATGACG 8697889 Query 38922 AGGCTCGTCCCCCGTTCCAGCTTCTGCTTCATCAGGGGCACCAGCTCCCACCTGTTGGCG 38981 ||| || ||| | | ||| | ||| || | ||||| | ||||| || || Sbjct 8697890 AGGGTCACACCCTGGCTGAACTTTTCCTTAATTAATGGCACTTGTTCCCAGTGATTTGCA 8697949 Query 38982 GAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGTCTTACTCTCCAGGTACGAGCTG 39041 || || |||||||| || | ||| || |||| || | || | |||| ||| || || Sbjct 8697950 GAAAAAAGCAGGTGCACCGAGTGATCCTCCAAATCACTTTTCTTTTCCAAGTAGGAACTC 8698009 Query 39042 ATCATCTTTCCGATGGTAGTGGTTCTGTCGGGGAACCTCATCAGCTCGGC-CGGTCTCCC 39100 | | || || | ||| | ||| || ||||| | | ||||||||| |||| ||| Sbjct 8698010 AGAAGTTTGCCAGTTTCAGTTGATCTTTCCGGGAAGCAGAGCAGCTCGGCGCGGTGGCCC 8698069 Query 39101 GCTACCTTGCAGAGCC--TCCACCAGCTTTTGACACTGTGTGGTCTTTCCAGCCCTGTCC 39158 | ||| ||| ||||||||||| | | ||| ||| |||| | | | |||| Sbjct 8698070 AGGGC---GCACAGCACATCCACCAGCTTGCGGCTCTGCGTGCTCTTCCTCGGGCAGTCC 8698126 Query 39159 ACTCCTTCCAATACCACAAGAGCTCC 39184 | || |||| || | ||||| || Sbjct 8698127 ATGCCCTCCAGCACTATGAGAGCCCC 8698152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931196027604480