Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq12132 158 2e-33 seq22719 127 4e-24 seq23499 122 2e-22 seq27380 87.8 3e-12 >seq12132 Length=2475592 Score = 158 bits (174), Expect = 2e-33 Identities = 557/862 (65%), Gaps = 39/862 (5%) Strand=Plus/Plus Query 25476 TATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCT 25535 ||| ||| | ||||| |||||||| | ||| |||||||||||| ||| | || || Sbjct 56451 TATCTGGCACATGTATAAGAAGGCGGAGGCCTCCTTCTGGACCGCCGAGGAGGTGGAGCT 56510 Query 25536 GGCCAAGGACATGGACGGCTGGTACGCTCT--ATCCAAAGACGAGCAGCATTTTCTCAAG 25593 | |||||||||| |||| | | || | || || ||| | || | || Sbjct 56511 GTCCAAGGACATTTGGCACTGGGAATCCCTGAAGCCCGAGGAGAGATACTTTATATCCC- 56569 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| |||| || |||||||| ||||| ||||| || || || || ||| || Sbjct 56570 -ACGTTCTGGCTTTATTTGCAGCAAGTGATGACATAGTAAATGAAAACTTGGTGGAGCGA 56628 Query 25654 TTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 || | | ||||| ||| ||| || ||| |||||||| |||||||| || |||| Sbjct 56629 TTTAACCAAGAAGTTCAGATTACA--GAAGCCCGCTGTTTCTATGGTTTCCAAATTGCCA 56686 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACG 25768 | ||||| | || ||||| ||||| | || || || || ||||| | ||| Sbjct 56687 TGGAAAACATACATTCTGAAATGTAT---AGTCTCCTTATTGACACTTACATAAAAGATC 56743 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 | ||| || || || || |||||| || || || | |||||| || Sbjct 56744 CCAACGAAAGGGAATTTCTCTTCAATGCCATTGAAACGATGCCTTGTGTCAAGA---AGT 56800 Query 25829 CGCGGTGGGCCATGAAGTGGATCA---ACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGG 25885 | |||||| || ||||| ||| ||| ||||| | ||| || || | | Sbjct 56801 CAGATTGGGCCTTGCGCTGGATTGGGGACAAACAG---GCTACCTATGGTGAACG-CGCG 56856 Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGC 25945 ||||||||||||| ||||| |||||||| || ||||| ||||| |||| ||||||| Sbjct 56857 TAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGC 56916 Query 25946 TCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004 ||||| | | | |||| ||||| || || ||||| || || || || ||||| || Sbjct 56917 TCAAG-AAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGAT 56975 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCT 26064 |||||| | ||| | |||||||| |||||| | | || ||| | | |||||||| Sbjct 56976 GAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTCA---AACACCTAGTACACAAACCA 57032 Query 26065 TCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNN 26124 || | |||| || | | || || | | ||||| ||| || ||||||| | Sbjct 57033 TCAGAGGAGAGAGTATGCGAAATAATTATCAATGCTGTTCGGATAGAACAGGAGTTCCTC 57092 Query 26125 NNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATT 26184 | || |||||| || || |||| ||||||||| Sbjct 57093 ACTGAGGCTTTGCCTGTGAAGCTCATTGGGATGAACTGCACTCTAATGAAGCAATACATT 57152 Query 26185 GAGTATGTGGCCGAC---CATCTGCTGTGCCAGCTGGG-ACTCGCCAGACTCT-ACAGTA 26239 |||| |||||| | | | | ||||| | ||||| | || || | | | |||| Sbjct 57153 GAGTTTGTGGCAGGCAGACTTATGCTG---GAACTGGGTTTTAGCAAGGTTTTCAGAGTA 57209 Query 26240 CGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTG 26299 || || || ||||||||||| || || || ||||||| |||| |||||||||| Sbjct 57210 --GAGAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGATAGACTAACTTCTTTG 57267 Query 26300 AAAAGAGGGTCGGCGACTATCA 26321 | ||||| || ||||| ||||| Sbjct 57268 AGAAGAGAGTAGGCGAGTATCA 57289 >seq22719 Length=8987742 Score = 127 bits (140), Expect = 4e-24 Identities = 312/470 (66%), Gaps = 18/470 (4%) Strand=Plus/Plus Query 25859 AGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCA 25918 |||| ||||| | ||| || || | |||||||||||||| ||||| |||||||| || Sbjct 8554833 AGAG-GCTACCTATGGTGAACGCGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTT 8554891 Query 25919 GCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTAC 25977 ||||| ||||| |||| |||||||||||| | | | |||| ||||| || || Sbjct 8554892 CTGGTTCTTTTGCATCCATATTCTGGCTCAAG-AAACGAGGACTGATGCCTGGCCTCACA 8554950 Query 25978 TTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTC 26037 ||||| || || || || ||||| || |||||| | ||| | |||||||| |||||| | Sbjct 8554951 TTTTCTAATGAACTTATTAGCAGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGATG 8555010 Query 26038 TACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAG-TATCATCAAAGA 26096 | || ||| | | |||||||| || | |||| || | || || || | | Sbjct 8555011 TTCA---AACACATAGTACACAAACCATCAGAGGAGAGAGT-AAGAGAAATAATTATGAA 8555066 Query 26097 GGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCAT 26156 ||||| ||| || ||||||| | | || || Sbjct 8555067 TGCTGTTCGGATAGAACAGGAGTTCCTCACTGAGGCCTTGCCTGTGAAGCTCATTGGGAT 8555126 Query 26157 GAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGAC---CATCTGCTGTGCCA 26213 ||| || || |||| ||||||||||||| |||||| ||| | | ||||| | Sbjct 8555127 GAATTGCACTCTAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATGCTG---GA 8555183 Query 26214 GCTGGG-ACTCGCCAGACTCT-ACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATA 26271 ||||| | || || | | | |||| || || || | ||||||||| || || Sbjct 8555184 ACTGGGTTTTAGCAAGGTTTTCAGAGTA--GAGAATCCATTTGCCTTTATGGAGAATATT 8555241 Query 26272 TCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 || ||||||| ||||| ||||||||||| ||||| || ||||| ||||| Sbjct 8555242 TCACTGGAAGGAAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAGTATCA 8555291 >seq23499 Length=2348749 Score = 122 bits (134), Expect = 2e-22 Identities = 355/534 (66%), Gaps = 22/534 (4%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGC--TGGTACGCTCT--AT 25567 |||||||||||| ||| | || ||| || ||||||| |||| ||| | | || | Sbjct 2216429 CTGGACCGCCGAGGAGGTGGACCTGTCCGAGGACATT--CGGCACTGGGAATCCCTGAAG 2216372 Query 25568 CCAAAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTA 25627 || || ||| | || | || |||| |||| ||||||||||| | | || | Sbjct 2216371 CCCGAGGAGAGAGACTTTATATCCC--ACGTTCTGGCTTTCTTTGCAGCGAGTAAGGGCA 2216314 Query 25628 TAGTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAA 25685 |||| || || || || ||| |||| | | || || ||| ||| || ||| Sbjct 2216313 TAGTAAATGAAAACTTGGTGGAGCGATTTAGCCAAGAGGTTCAGATTACA--GAAGCCCG 2216256 Query 25686 GTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCT 25745 |||||||| || ||||| || |||| ||||| | || ||||| ||||| | || Sbjct 2216255 CTGTTTCTATGGATTCCAAATTGCCAGGGAAAACATACATTCTGAAATGTAT---AGTCT 2216199 Query 25746 TCTGATG---ACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGA 25802 || || || ||||| | ||| | ||| || || || || |||| | || Sbjct 2216198 CCTTATTGACACTTACATAAAAGATCCCAGCGAAAGGGAATTTCTCTTCAATGCCGTTGA 2216139 Query 25803 GCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAG 25862 || || | |||||| |||||| |||||| || | |||| | | || || Sbjct 2216138 AACGATGCCTTGTGTCAAGAAGAAGGCAGACTGGGCCTTGCACTGGA-CTGGGGACAAAG 2216080 Query 25863 CGCT-ACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCG 25921 | | || | ||| || || | |||||||||||||| ||||| ||||| || || | Sbjct 2216079 AGGTTACCTATGGTGAACGTGTCGTAGCCTTTGCTGCAGTGGAAGGCATTTTCTTTTCTG 2216020 Query 25922 GTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTT 25980 |||| ||||| |||| |||||||||||| | | | |||| ||||| || || ||| Sbjct 2216019 GTTCTTTTGCATCCATATTCTGGCTCAAG-AAACGAGGACTGATGCCTGGCCTCACATTT 2215961 Query 25981 TCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTG 26034 || || || || || ||||| || |||||| | ||| | |||||||| |||||| Sbjct 2215960 TCTAATGAACTTATTAGCAGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTG 2215907 >seq27380 Length=10165399 Score = 87.8 bits (96), Expect = 3e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || || ||| | |||||||||||||| ||||| |||||||| || ||||| ||||| Sbjct 7666646 GGTGAACGGGTCGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCA 7666587 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCT 25991 |||| |||||||||||| | | | |||| ||||| || || ||||| || || || Sbjct 7666586 TCCATATTCTGGCTCAAG-AAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACT 7666528 Query 25992 CATCAGCAGGGACGAGG 26008 || ||||| || |||| Sbjct 7666527 TATTAGCAGAGATGAGG 7666511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928508999383680