Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq15423 102 7e-17 seq15807 89.7 4e-13 seq20084 84.2 2e-11 >seq15423 Length=9779632 Score = 102 bits (112), Expect = 7e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 |||||||| || ||||| ||||| | ||||| || || |||||| |||| ||||| Sbjct 6864345 AAAATGCAGATTTTTGTGAAAACTCTTACGGGGAAGACTATTACCCTCGAAGTTGAACCC 6864404 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || ||| | | || | ||| |||||| || || || ||| | || ||| Sbjct 6864405 TCGGATACGTTAGAAAATGTAAAGGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGAT 6864464 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 || || ||||| |||||||| ||||| ||| |||||||| ||| || | || || Sbjct 6864465 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 6864524 Query 28731 AACATTCAAAAAGAATCTACTCTGCA 28756 |||||||| | || ||||||||||| Sbjct 6864525 AACATTCAGATGGAGTCTACTCTGCA 6864550 >seq15807 Length=9314881 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 |||||||| || ||||| ||||| | | ||| || ||||| ||| ||| || ||| Sbjct 6716423 AAAATGCAGATTTTTGTGAAAACCCTTATGGGGAAGACCATCACCCTCGAGGTTGAGCCT 6716482 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 ||||| ||| | | || | ||| || ||| || || || ||| | || ||| Sbjct 6716483 TCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTTCTGAT 6716542 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 || || ||||| |||||||| |||| ||| |||||||| ||| || | || || Sbjct 6716543 CAGCAAAGACTGATCTTTGCTAGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTAC 6716602 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGA 28769 ||||||||||| || |||| ||| || | || || ||| Sbjct 6716603 AACATTCAAAAGGAGTCTATTCTTCATCTTGTGTTGAGA 6716641 >seq20084 Length=6261642 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 |||||||| || || | ||||| | | ||| || || || ||| ||| | ||||| Sbjct 3809973 AAAATGCAGATTTTCATGAAAACCCTTATGGGGAAGACTATCACCCTCGAGATTGAACCC 3809914 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 ||||| | | | || | ||| || ||| || || || ||| | || ||| Sbjct 3809913 TCAGATATGACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 3809854 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 || || ||||| ||| |||| ||||| ||| |||||||| | ||| || | || || Sbjct 3809853 CAGCAAAGACTGATCATTGCTGGCAAGCAACTGGAAGATGGTTGTACTTTGTCTGACTAC 3809794 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGA 28769 ||||||||||| || |||||||| || | || |||||| Sbjct 3809793 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTAAGA 3809755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425254850391438