Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq22996 325 5e-84 seq10187 282 5e-71 seq3843 149 7e-31 seq24834 120 4e-22 seq21427 87.8 2e-12 >seq22996 Length=989293 Score = 325 bits (360), Expect = 5e-84 Identities = 672/992 (68%), Gaps = 17/992 (2%) Strand=Plus/Plus Query 160048 GTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTAT 160107 ||| |||||| || |||| ||| |||| ||| || | |||||| || |||| || |||| Sbjct 690978 GTCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAACTTAT 691037 Query 160108 TTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGC 160167 | || |||| ||||| || | || ||||||| || ||| || | ||||| | || Sbjct 691038 TGGCAAACAAGTGGTGC---TTGCGCAGCATCCAGTTCAAGTCGCCAGCTCCGAAAATGC 691094 Query 160168 AGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCAC 160227 | || || || | |||||| |||| ||| || ||||| |||| || || | || |||| Sbjct 691095 ACACCGAGCGCACGTGCACCCCGTCGCAGGGTGGGTAGGGAGCACCCTTGGAAACATCAC 691154 Query 160228 CTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATT 160287 | || ||||||||||||| ||||||||||| ||||| |||||||| || ||||| | Sbjct 691155 CCTCAAAGTACTGCCACTTGACAAACCTGGCAATCGCGTGCATGTCAGACAAATCGTACT 691214 Query 160288 TGTACAT--CAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAG 160345 | | | ||| | || |||||| | | || || | ||| | ||| ||||| || Sbjct 691215 TATGGCTGGCAGAGAGTGAGC-CCGGGA-CTTCAGGAATCCTCTGGATGGTAGCCCAGAG 691272 Query 160346 GTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTC 160405 | || || ||||| || ||||| | | ||| ||||| |||| | |||| | Sbjct 691273 ATACTCATCAGGGCTATATGTGTCTTGTGCCCACTCCATAAACTTTTGGATTTTTTCATT 691332 Query 160406 CCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATAT 160465 | | || || | | || || || | || |||||||| || ||||| || || | Sbjct 691333 CTGTAGTACATACGCCACATACTCCCTACTGACCACAAAGTAGGCACTGCCAGAAAAAAG 691392 Query 160466 CGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCAC 160525 ||| | | || || ||||| | || ||||| | || | ||| || | Sbjct 691393 GGGTGTTTCCAGCGGAGGAAGCACTTTGACAGTCCCTGTGTTTGTCAACTTTCCATTAAT 691452 Query 160526 CAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAG 160585 | | | | ||||| |||||||| | || | | |||||| | ||||| || || Sbjct 691453 GACCTCATACCGCTTTTTCCACCTTTCTTCTTTATTGGATGGCATCCTCTCCGTTTCCAG 691512 Query 160586 ACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGG 160645 |||| | || | | | || |||| | |||| || |||||||| || || | || Sbjct 691513 GTTGTTTTCTCCCATCAACAACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAATAGG 691572 Query 160646 AAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTC 160705 ||| || |||| || | ||||||| ||||||||| || || ||| ||| ||||| Sbjct 691573 AAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCCTTCATTGCGTAGAGGTC 691632 Query 160706 CCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAG 160765 | ||||||| || | || ||||| || |||||||| || || || || || |||| | Sbjct 691633 CTTCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCTCCAA 691692 Query 160766 TTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG--AAAG 160823 | |||||||||||||| ||| |||||| || | || |||| ||| | ||| ||| Sbjct 691693 TCGGCTGGCCACAAAGACATTACTGAAACAGGAAGCAATGCCCATCACTG-CAGCTAAAT 691751 Query 160824 AACATCTTATCC---GCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAG 160880 | | |||| | ||| |||||| || | |||||| | ||||||||| ||| Sbjct 691752 AGGA----ATCCTTGGATTTTTTGTCCACATGAATGCAATAGAAATTCTGAGGCATATAG 691807 Query 160881 ATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCT 160940 |||||||| || | ||| || | ||| || ||||| || || | ||| ||||| || ||| Sbjct 691808 ATGGCCCTCAGTAGCCTGTCAAGCATTTCGATCTTGTGGTGAACCACTATAGAATATGCT 691867 Query 160941 ATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATA 161000 || |||||||| | ||| || ||| |||| | | | || || ||| ||||||| Sbjct 691868 ATTGGAAACTCTGCCTCTTCTTTACTAAGGGGCTCTACAATATATTTGCGCCTCTTGATG 691927 Query 161001 AAATAATCACAATCCCGCGTCATGTTGATATA 161032 ||| ||| ||| || | |||||||| ||||| Sbjct 691928 AAAGAATTACAGTCACTGGTCATGTTTATATA 691959 >seq10187 Length=3503860 Score = 282 bits (312), Expect = 5e-71 Identities = 663/990 (67%), Gaps = 13/990 (1%) Strand=Plus/Minus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| |||||| || |||| ||| |||| ||| || | |||||| || |||| || ||| Sbjct 1773948 TGTCTCAGATGCTCATCCAAACAATGGATGGCAAAGAGGTCAACATCCACGTCAAACTTA 1773889 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || ||| ||||| || | || ||||||| || ||| || | ||||| | | Sbjct 1773888 TTGGCAAACGAGTGGTGC---TTGCGCAGCATCCAGTTCAAGTCGCCAGCTCCGAAAATG 1773832 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || || || || | |||||| |||| ||| || ||||| |||| | || | || ||| Sbjct 1773831 CACACCGAGCGCACGTGCACCCCGTCGCAGGGTGGGTAGGGAGCATCCTTGGAGACATCA 1773772 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 || || ||||||||||||| ||||||||||| | || |||||||| || ||||| Sbjct 1773771 CCCTCCAAGTACTGCCACTTGACAAACCTGGCAACAGCGTGCATGTCAGATAAATCGTAC 1773712 Query 160287 TTGTACAT--CAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 || | | ||| | || |||||| | | || || | ||| | || ||||| | Sbjct 1773711 TTATGGCTGGCAGAGAGTGAGC-CCGGGA-CTTCAGGAATCCTCTGGATGGCAGCCCAGA 1773654 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGT 160404 | | || || ||||| || ||||| | | ||| ||||| |||| |||| | Sbjct 1773653 GATACTCATCAGGGCTATATGTGTCTTGCGCCCACTCCATAAACTTCTGGATTTTTTCAT 1773594 Query 160405 CCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATA 160464 || | || || || || ||| |||| |||||||| || |||| || || | Sbjct 1773593 CCTGTAGTACACACCCCACATACTCTCTACTCACCACAAAGTAGGCACTGCTAGAAAAAA 1773534 Query 160465 TCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCA 160524 ||| | | || || |||| | || ||||| | || | ||| | | Sbjct 1773533 GGGGTGTTTCCAGCGGAGGAAGCATTTTGACAGTCCCTGTGTTTGTCAGCTTTCCACTAA 1773474 Query 160525 CCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTA 160584 | | | | ||||| |||||||| | || | | |||||| | ||||| ||| Sbjct 1773473 TGACCTCATACCGCTTTTTCCACCTTTCTTCTTTATTGGATGGCATCCTCTCCGTTTCTG 1773414 Query 160585 GACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCG 160644 | |||| | || | | | || |||| | | || || |||||||| || || | | Sbjct 1773413 GGTTGTTTTCTCCCATCAACAACTTGAGCTTCCTAACAATTTCTAGGTTGGTTTTAATAG 1773354 Query 160645 GAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGT 160704 |||| || ||||||| ||| |||||| ||||||||| || || ||| | | |||| Sbjct 1773353 GAAAATCCATACCGCA-AAGATTATCAAGTACTTCCAGTTTGCCCTCGTTGCATAGAGGT 1773295 Query 160705 CCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTA 160764 || ||||||| || | || ||||| || |||||||| || || || || || |||| | Sbjct 1773294 CCTTCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCTCCA 1773235 Query 160765 GTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG--AAA 160822 | |||||||||||||| ||| |||||| || | || |||| ||| | ||| ||| Sbjct 1773234 ATCGGCTGGCCACAAAGACATTACTGAAACAGGAAGCAATGCCCATCACTG-CAGCTAAA 1773176 Query 160823 GAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 | | | || | ||| |||||| || | |||||| | ||||||||| ||||| Sbjct 1773175 TAGGA-ATCCTCGGATTTTTTGTCCACATGAATGCAATAGAAATTCTGAGGCATATAGAT 1773117 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 |||||| || | ||| || | ||| || ||||| ||||| | ||| |||| || ||||| Sbjct 1773116 GGCCCTCAGTAGCCTGTCAAGCATTTCGATCTTGTGATGAACCACTGTAGAATATGCTAT 1773057 Query 160943 CGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAA 161002 |||||||| | ||| || || |||| | | | || || ||| ||||||| || Sbjct 1773056 TGGAAACTCTGCCTCTTCTTTACAAAGGGCCTCTACAATATA-TTGCGCCTCTTGATGAA 1772998 Query 161003 ATAATCACAATCCCGCGTCATGTTGATATA 161032 | ||| ||| || | |||||||| ||||| Sbjct 1772997 AGAATTACAGTCACTGGTCATGTTTATATA 1772968 >seq3843 Length=8268663 Score = 149 bits (164), Expect = 7e-31 Identities = 225/320 (70%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || || || | ||| | | |||| || | ||| || | || || || |||||| | ||| Sbjct 8031759 TAGAGGGTGAGGCAGGCTGTTCCTGAGAACTTCCCATAACCAAAGGTATTGAAGTGACAC 8031818 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 ||| | || ||||| ||||||| |||||||||||| || || | ||||||||| |||| Sbjct 8031819 ATGTAACACCCTTCATCCTCCAGGGTGGTATTCCAGAAGGTGATGGTTGAGTTTTGGAGT 8031878 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 |||| ||| || ||||||| || ||||| | ||| || || || || || | | | Sbjct 8031879 CCCAGCTGGGTAATGTTCAACTTGTCCTTATAGGCAGGCTGGACCACCACCCCATAGCTG 8031938 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 | |||| | ||||| | ||| || ||||| | | || | |||||||| || || ||| Sbjct 8031939 TTGCTGTAAGTGGCTACGTTTTCTGGGCTTGCAGGTTTCTTTTTCTGCCATGTCACAATC 8031998 Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 || || || | || ||||| || ||||| | ||||| || || | |||| | ||| Sbjct 8031999 AGGACTTCGTAGGTAGTTTGCAGAGAGCATCTTAAGGAAGCAGGCGTATACAGCTGCTCT 8032058 Query 168450 CGCTCATCTTGAGTTACGAC 168469 | ||||| || || || || Sbjct 8032059 CTTTCATCCTGGGTCACCAC 8032078 Score = 109 bits (120), Expect = 6e-19 Identities = 150/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 167894 GTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACT 167953 ||| || ||||| |||| ||| || |||| ||| |||||||| || || || ||| | Sbjct 8028908 GTCGGTCACAGTCCCCAGATGCAGCACCTGGCAGATCACCTCC---TTCCCCACCTGATT 8028964 Query 167954 CTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAAC 168013 || || ||||| | || | |||||||| ||| || || ||||| | || | || Sbjct 8028965 TTTAGGGTCTTTGATCTGGAGGATGCTAGTAACAGACGTGGTCCCATTTGGGTGAGACAC 8029024 Query 168014 GGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGG 168073 || || || || || ||||||||||| | | ||||||||||| || | ||||| || Sbjct 8029025 AGTCTTTGTACTATTTTCAATCCCTGACCGAGGAACCTTCCAGAAGATCATGGGAGCTGG 8029084 Query 168074 TCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 || || || |||||||| || ||||||| Sbjct 8029085 ACGGGCAGTGGCAGAGCAAGTGATATTTA 8029113 >seq24834 Length=2526834 Score = 120 bits (132), Expect = 4e-22 Identities = 163/229 (71%), Gaps = 9/229 (4%) Strand=Plus/Plus Query 160048 GTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTAT 160107 ||| |||||| || |||| ||| |||| ||| || | |||||| || ||| || ||| Sbjct 1961925 GTCTCAGATGCTCTTCCAAACACTGGATGGCAAAGAGGTCAACATCCAAGTCAAACTTAC 1961984 Query 160108 TTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGC 160167 | || |||| ||| || || ||||||| || ||| || | |||| |||| Sbjct 1961985 TGGCAAACAAGTGGCGA---------AGCATCCAGTTCAAGTCGCCAGCTCCGAGAACGC 1962035 Query 160168 AGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCAC 160227 | || || || | ||||| |||| ||| || ||||| |||| || || | || |||| Sbjct 1962036 ACACCGAGCGCACATGCACCCCGTCGCAGGGTGGGTAGGGAGCACCCTTGGAAACATCAC 1962095 Query 160228 CTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 | || ||||||||||||| ||||||||||| | | | |||||||| || Sbjct 1962096 CCTCAAAGTACTGCCACTTGACAAACCTGGCAACCACGTGCATGTCAGA 1962144 Score = 113 bits (124), Expect = 5e-20 Identities = 162/230 (70%), Gaps = 9/230 (4%) Strand=Plus/Plus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| |||||| || |||| ||| |||| ||| || | |||| | || |||| || ||| Sbjct 1966868 TGTCTCAGATGCTCTTCCAAACACTGGATGGCAAAGAGGTCAGCATCCACGTCAAACTTA 1966927 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 | || |||| ||| || || ||||||| || ||| || | | || | | Sbjct 1966928 CTGGCAAACAAGTGGCGA---------AGCATCCAGTTCAAGTCGCCAGCTCTGAGAATG 1966978 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || || || || | |||||| |||| || || ||||| |||| || || | || ||| Sbjct 1966979 CACACCGAGCGCACGTGCACCCCGTCACAGGGTGGGTAGGGAGCACCCTTGGAAACATCA 1967038 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 || || ||||||||||||| ||||| ||||| | ||| |||||||| || Sbjct 1967039 CCCTCAAAGTACTGCCACTTGACAAAACTGGCAACCGCGTGCATGTCAGA 1967088 >seq21427 Length=8993756 Score = 87.8 bits (96), Expect = 2e-12 Identities = 195/290 (67%), Gaps = 7/290 (2%) Strand=Plus/Plus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || || || || ||||| || || ||| || || ||||| |||| ||| || | Sbjct 5620564 GTCAAACTTGTTGGCCAACAGGTGATG---GTTTTGAAGCATCCAATGCAAGTCCCCAGC 5620620 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| |||| ||||| | || ||| | || |||||| ||| | || || | Sbjct 5620621 CCCATACACACAGACAGCCCGCTGGTGAATTCCAGAGCAAGGGCCGTAAGGGGCACCCTG 5620680 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 ||||| || || | | ||||||||| || | |||||| || | |||||| || Sbjct 5620681 ACTGACGTCTCCCTCATGATTCTGCCACTTGACCAGCCTGGCAATAGAAATCATGTCTGA 5620740 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAA--CGCCGGGCATACGCTGTAGG 160334 | |||| || ||| | ||||| | || || | | || ||| ||||| ||| Sbjct 5620741 GATGTCATACTTGCGGTGATGAGGAACAGAGCCAGGCATCCACCATGCA--CGCTGAAGG 5620798 Query 160335 GTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCAT 160384 |||||||| |||||||| || |||||||| ||||| || |||||| || Sbjct 5620799 GTGGCCCAGAGGTGTTCATCAGGGCTGTAGGTGTCTTTTACCCATTCAAT 5620848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577010520828720