Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq12132 125 1e-23 >seq12132 Length=2475592 Score = 125 bits (138), Expect = 1e-23 Identities = 292/436 (67%), Gaps = 8/436 (2%) Strand=Plus/Minus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || ||||||||| ||||||||| ||||||||| || | ||| ||| ||| || | Sbjct 57001 CAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGG 56942 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||| | |||| ||| || ||||| ||||| ||||| ||| || ||||||||| Sbjct 56941 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAG 56882 Query 18278 ATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAG 18336 || || || || ||| || || |||| | |||| || | | | ||| | Sbjct 56881 ATGCCTTCCACTGCA-GCAAAGGCTACGCG-CGTTCACCATAGGTAGCCTGTTTGTCCCC 56824 Query 18337 TATCCATTTTTGTGCCCATTCTC-CTTNNNNNNNNATACACGGTATACTCTCTATAGCAT 18395 ||||| ||||| ||| ||| | ||| || || | || || |||| Sbjct 56823 AATCCAGCGCAAGGCCCAATCTGACTTCTTG----ACACAAGGCATCGTTTCAATGGCAT 56768 Query 18396 TAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACA 18455 | || | | || |||| |||| ||||||||| |||||||| || | | | ||||| Sbjct 56767 TGAAGAGAAATTCCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATACA 56708 Query 18456 TTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGAT 18515 |||||||||||||| ||||||| || || || |||| ||| || | | || || | | Sbjct 56707 TTTCAGAATGTATGTTTTCCATGGCAATTTGGAAACCATAGAAACAGCGGGCTTCTGTAA 56648 Query 18516 ATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATG 18575 |||| || | ||||| || ||||| || ||||| ||||| | ||| | || Sbjct 56647 TCTGAACTTCTTGGTTAAATCGCTCCACCAAGTTTTCATTTACTATGTCATCACTTGCTG 56588 Query 18576 CGAAAAATGCCAAAAC 18591 | || || |||| ||| Sbjct 56587 CAAATAAAGCCAGAAC 56572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731607409975200