Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq26070 89.7 4e-13 seq27641 86.0 5e-12 seq15807 84.2 2e-11 >seq26070 Length=4351986 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| ||||| || ||||| | ||||| || ||||| ||| |||| || | Sbjct 512596 AAAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCC 512655 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||||| | | | ||||| ||||| ||||| ||||| | || ||| Sbjct 512656 TTGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 512715 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 ||||| ||||| || | ||| || || || ||||| |||| || || | |||||| Sbjct 512716 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGACGGACGTACTCTGTCTGACTAC 512775 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGA 107771 |||||||| ||||||||||| | || | ||||||||| Sbjct 512776 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGA 512814 >seq27641 Length=16599674 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 ||||| |||||| | || |||||||| ||||| || | ||| || || || ||||| Sbjct 1039127 GATAAGGAAGGCATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAA 1039186 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||| | || || | |||||||||||||||||||||||||| | || | ||| || Sbjct 1039187 GACGGACATACTTTGTCTGACTACAACATTCAAAAGGAGTCTACTCTTCATCTTGTGCTG 1039246 Query 107769 AGATTGCGAGGGGGAAATAATAAAA 107793 ||| | || || || ||| |||| Sbjct 1039247 AGACTTCGTGGTGGTGCTAAGAAAA 1039271 >seq15807 Length=9314881 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| |||||||| ||||| | | || || ||||| ||| |||| ||| || Sbjct 6716423 AAAATGCAGATTTTTGTGAAAACCCTTATGGGGAAGACCATCACCCTCGAGGTTGAGCCT 6716482 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||||| | | | ||||| ||||| ||||| ||||| | || ||| Sbjct 6716483 TCAGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTTCTGAT 6716542 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 ||||| ||||| || | ||| | || || ||||| || | || || | |||||| Sbjct 6716543 CAGCAAAGACTGATCTTTGCTAGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTAC 6716602 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGA 107771 ||||||||||||||||||| | || | ||||||||| Sbjct 6716603 AACATTCAAAAGGAGTCTATTCTTCATCTTGTGTTGAGA 6716641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398736201163258